Checkstyle Results

The following document contains the results of Checkstylerss feed

Summary

Files Infos Infos Warnings Warnings Errors Errors
15 0 0 1447

Rules

Rules Violations Severity
PackageHtml 3 Errors Error
NewlineAtEndOfFile 0 Errors Error
Translation 0 Errors Error
JavadocMethod 42 Errors Error
JavadocType 1 Errors Error
JavadocVariable 38 Errors Error
JavadocStyle 13 Errors Error
ConstantName 0 Errors Error
LocalFinalVariableName 0 Errors Error
LocalVariableName 0 Errors Error
MemberName 0 Errors Error
MethodName 0 Errors Error
PackageName 0 Errors Error
ParameterName 0 Errors Error
StaticVariableName 0 Errors Error
TypeName 0 Errors Error
AvoidStarImport 4 Errors Error
IllegalImport 0 Errors Error
RedundantImport 14 Errors Error
UnusedImports 70 Errors Error
FileLength 0 Errors Error
LineLength 40 Errors Error
MethodLength 1 Errors Error
ParameterNumber 0 Errors Error
EmptyForIteratorPad 0 Errors Error
MethodParamPad 0 Errors Error
NoWhitespaceAfter 0 Errors Error
NoWhitespaceBefore 2 Errors Error
OperatorWrap 0 Errors Error
ParenPad 12 Errors Error
TypecastParenPad 0 Errors Error
TabCharacter 435 Errors Error
WhitespaceAfter 58 Errors Error
WhitespaceAround 340 Errors Error
ModifierOrder 0 Errors Error
RedundantModifier 0 Errors Error
AvoidNestedBlocks 0 Errors Error
EmptyBlock 1 Errors Error
LeftCurly 0 Errors Error
NeedBraces 9 Errors Error
RightCurly 0 Errors Error
AvoidInlineConditionals 0 Errors Error
DoubleCheckedLocking 0 Errors Error
EmptyStatement 0 Errors Error
EqualsHashCode 0 Errors Error
HiddenField 6 Errors Error
IllegalInstantiation 0 Errors Error
InnerAssignment 0 Errors Error
MagicNumber 34 Errors Error
MissingSwitchDefault 0 Errors Error
RedundantThrows 0 Errors Error
SimplifyBooleanExpression 0 Errors Error
SimplifyBooleanReturn 0 Errors Error
DesignForExtension 55 Errors Error
FinalClass 1 Errors Error
HideUtilityClassConstructor 1 Errors Error
InterfaceIsType 0 Errors Error
VisibilityModifier 2 Errors Error
ArrayTypeStyle 1 Errors Error
FinalParameters 17 Errors Error
GenericIllegalRegexp
  • message: "Line has trailing spaces."
  • format: "\s+$"
247 Errors Error
TodoComment 0 Errors Error
UpperEll 0 Errors Error

Details

org/molwind/chemical/io/GraphMain2.java

Violation Message Line
Errors Unused import - java.util.HashMap. 3
Errors Unused import - java.util.Map. 4
Errors Unused import - java.util.Iterator. 5
Errors Duplicate import to line 4 - java.util.Map. 6
Errors Unused import - java.util.Map. 6
Errors Unused import - java.util.Collection. 7
Errors Unused import - java.io.StringWriter. 9
Errors Unused import - java.io.FileReader. 12
Errors Unused import - java.awt.AlphaComposite. 13
Errors Unused import - java.awt.BorderLayout. 14
Errors Unused import - java.awt.Color. 15
Errors Unused import - java.awt.Container. 16
Errors Unused import - java.awt.Dimension. 17
Errors Unused import - java.awt.Font. 18
Errors Unused import - java.awt.Graphics. 19
Errors Unused import - java.awt.Graphics2D. 20
Errors Unused import - java.awt.RenderingHints. 21
Errors Unused import - java.awt.geom.AffineTransform. 22
Errors Unused import - java.awt.image.BufferedImage. 23
Errors Unused import - javax.imageio.ImageIO. 24
Errors Unused import - javax.swing.ImageIcon. 25
Errors Unused import - javax.swing.JFrame. 26
Errors Unused import - javax.swing.JPanel. 27
Errors Unused import - javax.swing.WindowConstants. 28
Errors Duplicate import to line 15 - java.awt.Color. 29
Errors Unused import - java.awt.Color. 29
Errors Unused import - java.awt.Paint. 30
Errors Unused import - org.openscience.cdk.io.MDLReader. 32
Errors Unused import - org.openscience.cdk.Molecule. 34
Errors Unused import - org.openscience.cdk.DefaultChemObjectBuilder. 37
Errors Unused import - org.openscience.cdk.exception.InvalidSmilesException. 38
Errors Unused import - org.openscience.cdk.geometry.GeometryToolsInternalCoordinates. 39
Errors Unused import - org.openscience.cdk.interfaces.IAtomContainer. 40
Errors Duplicate import to line 33 - org.openscience.cdk.interfaces.IMolecule. 41
Errors Unused import - org.openscience.cdk.layout.StructureDiagramGenerator. 42
Errors Unused import - org.openscience.cdk.renderer.Renderer2D. 43
Errors Unused import - org.openscience.cdk.renderer.Renderer2DModel. 44
Errors Unused import - org.openscience.cdk.smiles.SmilesParser. 45
Errors Duplicate import to line 8 - java.io.IOException. 47
Errors Unused import - org.molwind.model.PlacedWorldEntity. 49
Errors Line has trailing spaces. 50
Errors Unused import - edu.uci.ics.jung.graph.Graph. 50
Errors Unused import - edu.uci.ics.jung.visualization.BasicVisualizationServer. 51
Errors Duplicate import to line 17 - java.awt.Dimension. 52
Errors Unused import - java.awt.Dimension. 52
Errors Unused import - edu.uci.ics.jung.graph.SparseMultigraph. 54
Errors Unused import - edu.uci.ics.jung.io.GraphMLWriter. 55
Errors Using the '.*' form of import should be avoided - edu.uci.ics.jung.*. 56
Errors Unused import - edu.uci.ics.jung.graph.util.EdgeType. 57
Errors Unused import - edu.uci.ics.jung.graph.SparseGraph. 59
Errors Unused import - edu.uci.ics.jung.graph.DelegateTree. 60
Errors Unused import - edu.uci.ics.jung.graph.DelegateForest. 61
Errors Using the '.*' form of import should be avoided - edu.uci.ics.jung.algorithms.layout.*. 63
Errors Duplicate import to line 33 - org.openscience.cdk.interfaces.IMolecule. 65
Errors Duplicate import to line 41 - org.openscience.cdk.interfaces.IMolecule. 65
Errors Duplicate import to line 34 - org.openscience.cdk.Molecule. 66
Errors Unused import - org.openscience.cdk.Molecule. 66
Errors Unused import - edu.uci.ics.jung.algorithms.layout.StaticLayout. 67
Errors Using the '.*' form of import should be avoided - org.molwind.graph.*. 69
Errors Unused import - org.molwind.model.PartOf. 70
Errors Unused import - org.molwind.chemical.model.ChemicalWorld. 74
Errors Unused import - org.molwind.chemical.model.ChemicalEntity. 75
Errors Unused import - org.openscience.cdk.io.iterator.IteratingMDLReader. 77
Errors Duplicate import to line 37 - org.openscience.cdk.DefaultChemObjectBuilder. 78
Errors Unused import - org.openscience.cdk.DefaultChemObjectBuilder. 78
Errors Duplicate import to line 23 - java.awt.image.BufferedImage. 80
Errors Unused import - java.awt.image.BufferedImage. 80
Errors Duplicate import to line 37 - org.openscience.cdk.DefaultChemObjectBuilder. 84
Errors Duplicate import to line 78 - org.openscience.cdk.DefaultChemObjectBuilder. 84
Errors Unused import - org.openscience.cdk.DefaultChemObjectBuilder. 84
Errors Duplicate import to line 40 - org.openscience.cdk.interfaces.IAtomContainer. 85
Errors Unused import - org.openscience.cdk.interfaces.IAtomContainer. 85
Errors Duplicate import to line 45 - org.openscience.cdk.smiles.SmilesParser. 86
Errors Unused import - org.openscience.cdk.smiles.SmilesParser. 86
Errors Using the '.*' form of import should be avoided - javax.swing.*. 88
Errors Unused import - org.apache.commons.collections15.Transformer. 90
Errors Unused import - java.awt.geom.Point2D. 91
Errors Missing a Javadoc comment. 94
Errors Utility classes should not have a public or default constructor. 94
Errors '{' is not preceded with whitespace. 94
Errors Method length is 186 lines (max allowed is 150). 97
Errors Missing a Javadoc comment. 97
Errors Parameter args should be final. 97
Errors Array brackets at illegal position. 97
Errors '{' is not preceded with whitespace. 97
Errors Line has trailing spaces. 99
Errors Line has trailing spaces. 101
Errors Line has trailing spaces. 103
Errors Line has trailing spaces. 105
Errors Line has trailing spaces. 108
Errors Line contains a tab character. 110
Errors Line contains a tab character. 111
Errors Line contains a tab character. 112
Errors Line contains a tab character. 114
Errors Line contains a tab character. 115
Errors Line contains a tab character. 116
Errors Line has trailing spaces. 117
Errors Line contains a tab character. 117
Errors Line has trailing spaces. 119
Errors Line is longer than 80 characters. 120
Errors Line has trailing spaces. 121
Errors Line is longer than 80 characters. 122
Errors Line has trailing spaces. 123
Errors Line contains a tab character. 125
Errors Line has trailing spaces. 126
Errors Line contains a tab character. 128
Errors Line has trailing spaces. 130
Errors Line has trailing spaces. 131
Errors Line has trailing spaces. 132
Errors Line contains a tab character. 132
Errors Line is longer than 80 characters. 133
Errors Line contains a tab character. 133
Errors Line contains a tab character. 134
Errors Line contains a tab character. 135
Errors Line contains a tab character. 136
Errors Line contains a tab character. 137
Errors Line has trailing spaces. 139
Errors Line has trailing spaces. 140
Errors Line has trailing spaces. 141
Errors Line is longer than 80 characters. 142
Errors Line is longer than 80 characters. 143
Errors Line is longer than 80 characters. 145
Errors Line has trailing spaces. 146
Errors Line has trailing spaces. 148
Errors Line has trailing spaces. 150
Errors Line has trailing spaces. 158
Errors Line has trailing spaces. 160
Errors Line contains a tab character. 160
Errors Line contains a tab character. 161
Errors Line has trailing spaces. 163
Errors Line has trailing spaces. 165
Errors Line is longer than 80 characters. 167
Errors Line has trailing spaces. 171
Errors Line has trailing spaces. 172
Errors Line has trailing spaces. 175
Errors Line contains a tab character. 177
Errors Line contains a tab character. 178
Errors Line has trailing spaces. 179
Errors Line has trailing spaces. 180
Errors Line is longer than 80 characters. 181
Errors Line contains a tab character. 183
Errors Line has trailing spaces. 184
Errors Line contains a tab character. 184
Errors Line contains a tab character. 186
Errors Line has trailing spaces. 187
Errors Line is longer than 80 characters. 188
Errors Line contains a tab character. 189
Errors Line contains a tab character. 190
Errors Line contains a tab character. 191
Errors Line has trailing spaces. 192
Errors Line contains a tab character. 192
Errors Line has trailing spaces. 194
Errors Line is longer than 80 characters. 197
Errors Line has trailing spaces. 203
Errors Line has trailing spaces. 204
Errors Line has trailing spaces. 205
Errors Line is longer than 80 characters. 207
Errors Line has trailing spaces. 209
Errors Line has trailing spaces. 210
Errors Line contains a tab character. 210
Errors Line has trailing spaces. 211
Errors Line contains a tab character. 211
Errors Line has trailing spaces. 213
Errors Line contains a tab character. 213
Errors Line has trailing spaces. 215
Errors Line contains a tab character. 215
Errors '<' is not preceded with whitespace. 217
Errors '<' is not followed by whitespace. 217
Errors '>' is not preceded with whitespace. 217
Errors '<' is not preceded with whitespace. 217
Errors '<' is not followed by whitespace. 217
Errors '>' is not preceded with whitespace. 217
Errors '>' is not followed by whitespace. 217
Errors Line is longer than 80 characters. 218
Errors '=' is not followed by whitespace. 218
Errors '+' is not preceded with whitespace. 218
Errors '+' is not followed by whitespace. 218
Errors 'for' is not followed by whitespace. 222
Errors ':' is not preceded with whitespace. 222
Errors ':' is not followed by whitespace. 222
Errors '{' is not preceded with whitespace. 222
Errors Line contains a tab character. 223
Errors '=' is not preceded with whitespace. 223
Errors '=' is not followed by whitespace. 223
Errors Line contains a tab character. 224
Errors Line has trailing spaces. 226
Errors Line has trailing spaces. 227
Errors 'try' is not followed by whitespace. 228
Errors '{' is not preceded with whitespace. 228
Errors Line has trailing spaces. 229
Errors Line contains a tab character. 229
Errors Line contains a tab character. 230
Errors ',' is not followed by whitespace. 230
Errors Line contains a tab character. 231
Errors '=' is not preceded with whitespace. 231
Errors ',' is not followed by whitespace. 231
Errors Line has trailing spaces. 232
Errors Line contains a tab character. 232
Errors Line has trailing spaces. 233
Errors Line contains a tab character. 233
Errors Line contains a tab character. 234
Errors Line has trailing spaces. 235
Errors Line contains a tab character. 235
Errors Line contains a tab character. 236
Errors Line contains a tab character. 237
Errors Line contains a tab character. 238
Errors Line is longer than 80 characters. 239
Errors Line contains a tab character. 239
Errors Line contains a tab character. 240
Errors Line contains a tab character. 241
Errors Line contains a tab character. 242
Errors Line contains a tab character. 244
Errors Line has trailing spaces. 245
Errors Line contains a tab character. 245
Errors Line contains a tab character. 246
Errors Line contains a tab character. 247
Errors Line contains a tab character. 248
Errors Line contains a tab character. 249
Errors Line contains a tab character. 250
Errors Line contains a tab character. 251
Errors Line contains a tab character. 252
Errors Line has trailing spaces. 253
Errors Line contains a tab character. 253
Errors Line contains a tab character. 254
Errors Line contains a tab character. 255
Errors Line contains a tab character. 258
Errors Line contains a tab character. 260
Errors Line contains a tab character. 261
Errors Line contains a tab character. 262
Errors Line contains a tab character. 263
Errors Line contains a tab character. 265
Errors Line has trailing spaces. 266
Errors Line contains a tab character. 266
Errors Line has trailing spaces. 267
Errors Line contains a tab character. 267
Errors Line has trailing spaces. 268
Errors Line contains a tab character. 268
Errors Line contains a tab character. 269
Errors Line has trailing spaces. 271
Errors Line contains a tab character. 271
Errors Line has trailing spaces. 272
Errors Line contains a tab character. 272
Errors Line has trailing spaces. 273
Errors Line contains a tab character. 273
Errors 'catch' is not preceded with whitespace. 274
Errors '}' is not followed by whitespace. 274
Errors '{' is not preceded with whitespace. 274
Errors Line contains a tab character. 275
Errors Line has trailing spaces. 277
Errors Line contains a tab character. 277
Errors Line has trailing spaces. 278
Errors Line has trailing spaces. 280
Errors Line contains a tab character. 280
Errors Line has trailing spaces. 281
Errors Line contains a tab character. 281
Errors Line has trailing spaces. 283

org/molwind/chemical/io/SDFileIterator.java

Violation Message Line
Errors Unused import - java.util.Arrays. 24
Errors Missing a Javadoc comment. 48
Errors '<' is not preceded with whitespace. 48
Errors '<' is not followed by whitespace. 48
Errors '>' is not preceded with whitespace. 48
Errors Missing a Javadoc comment. 49
Errors Missing a Javadoc comment. 50
Errors Missing a Javadoc comment. 51
Errors '=' is not preceded with whitespace. 51
Errors '=' is not followed by whitespace. 51
Errors Missing a Javadoc comment. 52
Errors Missing a Javadoc comment. 53
Errors Missing a Javadoc comment. 54
Errors Missing a Javadoc comment. 55
Errors Missing a Javadoc comment. 56
Errors Line has trailing spaces. 57
Errors '<' is not preceded with whitespace. 70
Errors '<' is not followed by whitespace. 70
Errors '>' is not preceded with whitespace. 70
Errors '>' is not followed by whitespace. 70
Errors Line contains a tab character. 71
Errors 'for' is not followed by whitespace. 71
Errors ':' is not preceded with whitespace. 71
Errors ':' is not followed by whitespace. 71
Errors '{' is not preceded with whitespace. 71
Errors Line contains a tab character. 72
Errors Line contains a tab character. 73
Errors Line contains a tab character. 75
Errors Line contains a tab character. 79
Errors Line has trailing spaces. 84
Errors Line has trailing spaces. 86
Errors Missing a Javadoc comment. 87
Errors Line contains a tab character. 88
Errors Line has trailing spaces. 89
Errors Line contains a tab character. 89
Errors Line has trailing spaces. 90
Errors Line contains a tab character. 90
Errors Line has trailing spaces. 92
Errors Line contains a tab character. 92
Errors Line has trailing spaces. 93
Errors Line contains a tab character. 93
Errors Line contains a tab character. 100
Errors Line contains a tab character. 101
Errors Line has trailing spaces. 104
Errors Line contains a tab character. 104
Errors Line has trailing spaces. 107
Errors Line contains a tab character. 107
Errors Line is longer than 80 characters. 111
Errors Line contains a tab character. 111
Errors Line has trailing spaces. 112
Errors Line contains a tab character. 112
Errors Line has trailing spaces. 114
Errors Line contains a tab character. 114
Errors Line has trailing spaces. 120
Errors Line contains a tab character. 120
Errors Line contains a tab character. 121
Errors Line contains a tab character. 122
Errors '=' is not followed by whitespace. 122
Errors Line has trailing spaces. 123
Errors Line contains a tab character. 123
Errors Line contains a tab character. 124
Errors Line contains a tab character. 125
Errors ',' is not followed by whitespace. 125
Errors Line contains a tab character. 126
Errors Line contains a tab character. 127
Errors Line contains a tab character. 128
Errors Line contains a tab character. 129
Errors Line has trailing spaces. 130
Errors Line contains a tab character. 130
Errors Line has trailing spaces. 133
Errors Line has trailing spaces. 135
Errors Line has trailing spaces. 136
Errors First sentence should end with a period. 137
Errors Line has trailing spaces. 139
Errors Line has trailing spaces. 140
Errors Line has trailing spaces. 143
Errors Method 'setFileReader' is not designed for extension - needs to be abstract, final or empty. 143
Errors Parameter f should be final. 143
Errors Expected @param tag for 'f'. 143
Errors Line contains a tab character. 144
Errors Expected @throws tag for 'IOException'. 144
Errors '{' is not preceded with whitespace. 144
Errors Line contains a tab character. 145
Errors Line is longer than 80 characters. 146
Errors Line contains a tab character. 146
Errors ',' is not followed by whitespace. 146
Errors First sentence should end with a period. 150
Errors Line has trailing spaces. 152
Errors Line has trailing spaces. 153
Errors Method 'setFileReader' is not designed for extension - needs to be abstract, final or empty. 156
Errors Parameter name should be final. 156
Errors Expected @param tag for 'name'. 156
Errors '{' is not preceded with whitespace. 156
Errors Line contains a tab character. 157
Errors '=' is not preceded with whitespace. 157
Errors '=' is not followed by whitespace. 157
Errors Line contains a tab character. 158
Errors 'for' is not followed by whitespace. 158
Errors ':' is not preceded with whitespace. 158
Errors ':' is not followed by whitespace. 158
Errors '{' is not preceded with whitespace. 158
Errors Line has trailing spaces. 159
Errors Line contains a tab character. 159
Errors Line contains a tab character. 160
Errors 'if' is not followed by whitespace. 160
Errors '{' is not preceded with whitespace. 160
Errors Line has trailing spaces. 161
Errors Line contains a tab character. 161
Errors Line contains a tab character. 162
Errors '=' is not preceded with whitespace. 162
Errors '=' is not followed by whitespace. 162
Errors Line contains a tab character. 163
Errors Line contains a tab character. 164
Errors Line contains a tab character. 165
Errors Line contains a tab character. 166
Errors 'try' is not followed by whitespace. 166
Errors '{' is not preceded with whitespace. 166
Errors Line contains a tab character. 167
Errors Line is longer than 80 characters. 168
Errors Line contains a tab character. 168
Errors ',' is not followed by whitespace. 168
Errors Line contains a tab character. 169
Errors 'catch' is not preceded with whitespace. 169
Errors '}' is not followed by whitespace. 169
Errors 'catch' is not followed by whitespace. 169
Errors '{' is not preceded with whitespace. 169
Errors Line contains a tab character. 170
Errors Line contains a tab character. 171
Errors Line has trailing spaces. 174
Errors First sentence should end with a period. 175
Errors Line has trailing spaces. 178
Errors Method 'getDefaultEntityGraph' is not designed for extension - needs to be abstract, final or empty. 182
Errors Line contains a tab character. 183
Errors Expected @throws tag for 'IOException'. 183
Errors '{' is not preceded with whitespace. 183
Errors Line contains a tab character. 184
Errors Line contains a tab character. 185
Errors Line contains a tab character. 186
Errors Missing a Javadoc comment. 189
Errors Line has trailing spaces. 194
Errors Line contains a tab character. 194
Errors 'currentEntity' hides a field. 195
Errors 'lastEntity' hides a field. 196
Errors Line contains a tab character. 197
Errors Line has trailing spaces. 199
Errors Line contains a tab character. 199
Errors Line has trailing spaces. 205
Errors Line contains a tab character. 205
Errors Line has trailing spaces. 207
Errors Line contains a tab character. 207
Errors Line has trailing spaces. 209
Errors Line contains a tab character. 209
Errors Line has trailing spaces. 210
Errors Line contains a tab character. 210
Errors Line has trailing spaces. 217
Errors Line contains a tab character. 217
Errors Method 'hasNext' is not designed for extension - needs to be abstract, final or empty. 228
Errors Line has trailing spaces. 240
Errors Line has trailing spaces. 241
Errors Line has trailing spaces. 242
Errors Line contains a tab character. 242
Errors Line has trailing spaces. 243
Errors Line contains a tab character. 243
Errors Line has trailing spaces. 244
Errors Method 'next' is not designed for extension - needs to be abstract, final or empty. 252
Errors Method 'remove' is not designed for extension - needs to be abstract, final or empty. 264

org/molwind/chemical/io/SDFileLocator.java

Violation Message Line
Errors Line is longer than 80 characters. 43
Errors Missing a Javadoc comment. 45
Errors Missing a Javadoc comment. 46
Errors Missing a Javadoc comment. 47
Errors Missing a Javadoc comment. 48
Errors '<' is not preceded with whitespace. 48
Errors '<' is not followed by whitespace. 48
Errors '>' is not preceded with whitespace. 48
Errors First sentence should end with a period. 50
Errors Variable 'pathNames' must be private and have accessor methods. 54
Errors First sentence should end with a period. 72
Errors Line has trailing spaces. 76
Errors '(' is followed by whitespace. 82
Errors Line contains a tab character. 85
Errors '<' is not preceded with whitespace. 85
Errors '<' is not followed by whitespace. 85
Errors '>' is not preceded with whitespace. 85
Errors '>' is not followed by whitespace. 85
Errors First sentence should end with a period. 88
Errors Line has trailing spaces. 89
Errors Method 'addBasePath' is not designed for extension - needs to be abstract, final or empty. 94
Errors '{' is not preceded with whitespace. 94
Errors Line contains a tab character. 95
Errors First sentence should end with a period. 98
Errors Method 'removeBasePath' is not designed for extension - needs to be abstract, final or empty. 104
Errors '{' is not preceded with whitespace. 104
Errors Line contains a tab character. 106
Errors First sentence should end with a period. 109
Errors Line has trailing spaces. 112
Errors Line has trailing spaces. 114
Errors Method 'locateByFileName' is not designed for extension - needs to be abstract, final or empty. 119
Errors Parameter fileName should be final. 119
Errors Expected @param tag for 'fileName'. 119
Errors '{' is not preceded with whitespace. 120
Errors Line contains a tab character. 121
Errors Line contains a tab character. 122
Errors Line contains a tab character. 123
Errors 'for' is not followed by whitespace. 123
Errors ':' is not preceded with whitespace. 123
Errors ':' is not followed by whitespace. 123
Errors '{' is not preceded with whitespace. 123
Errors Line contains a tab character. 124
Errors 'if' is not followed by whitespace. 124
Errors '{' is not preceded with whitespace. 124
Errors Line is longer than 80 characters. 125
Errors Line contains a tab character. 125
Errors ',' is not followed by whitespace. 125
Errors Line is longer than 80 characters. 126
Errors Line contains a tab character. 126
Errors ',' is not followed by whitespace. 126
Errors Line contains a tab character. 127
Errors 'cast' is not followed by whitespace. 127
Errors Line has trailing spaces. 128
Errors Line contains a tab character. 128
Errors Line contains a tab character. 129
Errors Line has trailing spaces. 130
Errors Line contains a tab character. 130
Errors Line contains a tab character. 131
Errors Line has trailing spaces. 132
Errors Line contains a tab character. 132
Errors Line contains a tab character. 133
Errors Line has trailing spaces. 134
Errors Line contains a tab character. 134
Errors Line has trailing spaces. 136
Errors Line has trailing spaces. 137
Errors Missing a Javadoc comment. 138
Errors Parameter path should be final. 138
Errors '{' is not preceded with whitespace. 138
Errors Line contains a tab character. 139
Errors 'if' construct must use '{}'s. 140
Errors Line contains a tab character. 140
Errors 'if' is not followed by whitespace. 140
Errors Line contains a tab character. 141
Errors Line contains a tab character. 142
Errors Line contains a tab character. 143
Errors 'while' is not followed by whitespace. 143
Errors '{' is not preceded with whitespace. 143
Errors Line contains a tab character. 144
Errors 'cast' is not followed by whitespace. 144
Errors Line has trailing spaces. 145
Errors Line contains a tab character. 145
Errors Line contains a tab character. 146
Errors Line is longer than 80 characters. 147
Errors Line contains a tab character. 147
Errors 'cast' is not followed by whitespace. 147
Errors Line has trailing spaces. 148
Errors Line contains a tab character. 148
Errors 'if' construct must use '{}'s. 149
Errors Line contains a tab character. 149
Errors 'if' is not followed by whitespace. 149
Errors Line contains a tab character. 150
Errors Line has trailing spaces. 151
Errors Line contains a tab character. 151
Errors Line contains a tab character. 152
Errors Line has trailing spaces. 153
Errors Line contains a tab character. 153
Errors Line contains a tab character. 154
Errors Line has trailing spaces. 155
Errors Line contains a tab character. 155
Errors Method 'locateWorld' is not designed for extension - needs to be abstract, final or empty. 168
Errors Line has trailing spaces. 172
Errors Line contains a tab character. 172
Errors Missing a Javadoc comment. 218
Errors Parameter suffixes should be final. 218
Errors 'suffixes' hides a field. 218
Errors '{' is not preceded with whitespace. 218
Errors Line contains a tab character. 219
Errors '<' is not preceded with whitespace. 219
Errors '<' is not followed by whitespace. 219
Errors '>' is not preceded with whitespace. 219
Errors '<' is not preceded with whitespace. 219
Errors '<' is not followed by whitespace. 219
Errors '>' is not preceded with whitespace. 219
Errors '>' is not followed by whitespace. 219
Errors Line contains a tab character. 220
Errors 'for' is not followed by whitespace. 220
Errors ':' is not preceded with whitespace. 220
Errors ':' is not followed by whitespace. 220
Errors '{' is not preceded with whitespace. 220
Errors Line contains a tab character. 221
Errors Line contains a tab character. 222
Errors 'if' is not followed by whitespace. 222
Errors '{' is not preceded with whitespace. 222
Errors Line contains a tab character. 223
Errors Line has trailing spaces. 224
Errors Line contains a tab character. 224
Errors Line contains a tab character. 225
Errors 'else' is not preceded with whitespace. 225
Errors '}' is not followed by whitespace. 225
Errors 'else' is not followed by whitespace. 225
Errors '{' is not preceded with whitespace. 225
Errors Line contains a tab character. 226
Errors 'for' is not followed by whitespace. 226
Errors ':' is not preceded with whitespace. 226
Errors ':' is not followed by whitespace. 226
Errors '{' is not preceded with whitespace. 226
Errors Line has trailing spaces. 227
Errors Line contains a tab character. 227
Errors Line contains a tab character. 228
Errors '=' is not preceded with whitespace. 228
Errors '=' is not followed by whitespace. 228
Errors '+' is not preceded with whitespace. 228
Errors '+' is not followed by whitespace. 228
Errors Line contains a tab character. 229
Errors Line contains a tab character. 230
Errors Line contains a tab character. 232
Errors Line has trailing spaces. 233
Errors Line contains a tab character. 233
Errors Line contains a tab character. 234
Errors Line contains a tab character. 238
Errors Line contains a tab character. 239
Errors 'cast' is not followed by whitespace. 239
Errors '(' is followed by whitespace. 239
Errors ')' is preceded with whitespace. 239
Errors Line has trailing spaces. 240
Errors Line contains a tab character. 240
Errors Line has trailing spaces. 246
Errors Line contains a tab character. 248
Errors Line contains a tab character. 249
Errors Line contains a tab character. 250
Errors Line has trailing spaces. 251
Errors Line contains a tab character. 251
Errors Line has trailing spaces. 260
Errors Method 'getWorldNames' is not designed for extension - needs to be abstract, final or empty. 265
Errors '{' is not preceded with whitespace. 265
Errors Line is longer than 80 characters. 266
Errors Line contains a tab character. 266
Errors Line contains a tab character. 267
Errors Line contains a tab character. 269
Errors '<' is not preceded with whitespace. 269
Errors '<' is not followed by whitespace. 269
Errors '>' is not preceded with whitespace. 269
Errors '<' is not preceded with whitespace. 269
Errors '<' is not followed by whitespace. 269
Errors '>' is not preceded with whitespace. 269
Errors '>' is not followed by whitespace. 269
Errors Line contains a tab character. 271
Errors 'for' is not followed by whitespace. 271
Errors ':' is not preceded with whitespace. 271
Errors ':' is not followed by whitespace. 271
Errors '{' is not preceded with whitespace. 271
Errors Line contains a tab character. 272
Errors Line contains a tab character. 273
Errors 'if' is not followed by whitespace. 273
Errors '{' is not preceded with whitespace. 273
Errors Line has trailing spaces. 274
Errors Line contains a tab character. 274
Errors Line contains a tab character. 275
Errors Line has trailing spaces. 276
Errors Line contains a tab character. 276
Errors Line contains a tab character. 277
Errors 'else' is not preceded with whitespace. 277
Errors '}' is not followed by whitespace. 277
Errors 'if' is not followed by whitespace. 277
Errors '{' is not preceded with whitespace. 277
Errors Line contains a tab character. 278
Errors 'try' is not followed by whitespace. 278
Errors '{' is not preceded with whitespace. 278
Errors Line contains a tab character. 279
Errors Line has trailing spaces. 280
Errors Line contains a tab character. 280
Errors Line contains a tab character. 281
Errors ',' is not followed by whitespace. 281
Errors Line contains a tab character. 282
Errors 'catch' is not preceded with whitespace. 282
Errors '}' is not followed by whitespace. 282
Errors 'catch' is not followed by whitespace. 282
Errors '{' is not preceded with whitespace. 282
Errors Line contains a tab character. 283
Errors Line contains a tab character. 284
Errors Line contains a tab character. 286
Errors Line contains a tab character. 287
Errors Line contains a tab character. 288
Errors Line contains a tab character. 289
Errors Line contains a tab character. 290
Errors Line contains a tab character. 291
Errors Line has trailing spaces. 292
Errors Line contains a tab character. 292
Errors Line contains a tab character. 293
Errors Line contains a tab character. 294
Errors Line contains a tab character. 295
Errors Line has trailing spaces. 296
Errors Line contains a tab character. 296
Errors Line has trailing spaces. 297
Errors Line has trailing spaces. 298
Errors Line contains a tab character. 298
Errors Line contains a tab character. 299
Errors Line has trailing spaces. 300
Errors Line contains a tab character. 300
Errors Line contains a tab character. 302
Errors Line has trailing spaces. 303
Errors Line contains a tab character. 303
Errors 'cast' is not followed by whitespace. 305
Errors ';' is preceded with whitespace. 305
Errors Line has trailing spaces. 308
Errors Line has trailing spaces. 309
Errors Line is longer than 80 characters. 314
Errors Missing a Javadoc comment. 314
Errors Parameter dPath should be final. 314
Errors ',' is not followed by whitespace. 314
Errors Parameter result should be final. 314
Errors '<' is not preceded with whitespace. 314
Errors '<' is not followed by whitespace. 314
Errors '>' is not preceded with whitespace. 314
Errors Line has trailing spaces. 316
Errors Line contains a tab character. 316
Errors Line contains a tab character. 317
Errors Line has trailing spaces. 318
Errors Line has trailing spaces. 319
Errors Line contains a tab character. 319
Errors Line has trailing spaces. 320
Errors Line contains a tab character. 320
Errors Line contains a tab character. 321
Errors Line contains a tab character. 323
Errors 'for' is not followed by whitespace. 323
Errors ':' is not preceded with whitespace. 323
Errors ':' is not followed by whitespace. 323
Errors '{' is not preceded with whitespace. 323
Errors Line has trailing spaces. 324
Errors Line contains a tab character. 324
Errors 'if' is not followed by whitespace. 324
Errors '{' is not preceded with whitespace. 324
Errors Line has trailing spaces. 325
Errors Line contains a tab character. 325
Errors Line has trailing spaces. 328
Errors Line contains a tab character. 328
Errors Line contains a tab character. 329
Errors '+' is not preceded with whitespace. 329
Errors '+' is not followed by whitespace. 329
Errors '+' is not preceded with whitespace. 329
Errors '+' is not followed by whitespace. 329
Errors Line has trailing spaces. 330
Errors Line contains a tab character. 330
Errors Line contains a tab character. 331
Errors 'else' is not preceded with whitespace. 331
Errors '}' is not followed by whitespace. 331
Errors 'if' is not followed by whitespace. 331
Errors '{' is not preceded with whitespace. 331
Errors Line has trailing spaces. 332
Errors Line contains a tab character. 332
Errors Line contains a tab character. 333
Errors '+' is not preceded with whitespace. 333
Errors '+' is not followed by whitespace. 333
Errors '+' is not preceded with whitespace. 333
Errors '+' is not followed by whitespace. 333
Errors Line contains a tab character. 334
Errors '+' is not preceded with whitespace. 334
Errors '+' is not followed by whitespace. 334
Errors '+' is not preceded with whitespace. 334
Errors '+' is not followed by whitespace. 334
Errors ',' is not followed by whitespace. 334
Errors Line has trailing spaces. 335
Errors Line contains a tab character. 335
Errors Line contains a tab character. 336
Errors Line has trailing spaces. 337
Errors Line contains a tab character. 337
Errors Line contains a tab character. 339
Errors Line has trailing spaces. 340
Errors Line contains a tab character. 340
Errors Line has trailing spaces. 341
Errors Line has trailing spaces. 342
Errors Line contains a tab character. 342
Errors Missing a Javadoc comment. 346
Errors Line has trailing spaces. 347
Errors Line has trailing spaces. 350
Errors Line has trailing spaces. 354
Errors Method 'getParentAttributeName' is not designed for extension - needs to be abstract, final or empty. 363
Errors Method 'setParentAttributeName' is not designed for extension - needs to be abstract, final or empty. 373
Errors Method 'getIdAttributeName' is not designed for extension - needs to be abstract, final or empty. 383
Errors Method 'setIdAttributeName' is not designed for extension - needs to be abstract, final or empty. 393
Errors First sentence should end with a period. 396
Errors Line has trailing spaces. 397
Errors Method 'setPathNames' is not designed for extension - needs to be abstract, final or empty. 402
Errors First sentence should end with a period. 405
Errors Line has trailing spaces. 408
Errors Method 'getPathNames' is not designed for extension - needs to be abstract, final or empty. 412
Errors '{' is not preceded with whitespace. 412
Errors Line contains a tab character. 413
Errors Line has trailing spaces. 418

org/molwind/chemical/io/package.html

Violation Message Line
Errors Missing package documentation file. 0

org/molwind/chemical/model/ChemicalEntity.java

Violation Message Line
Errors Unused import - java.awt.geom.Point2D. 25
Errors Missing a Javadoc comment. 49
Errors Missing a Javadoc comment. 50
Errors Missing a Javadoc comment. 51
Errors Missing a Javadoc comment. 52
Errors Missing a Javadoc comment. 53
Errors '=' is not preceded with whitespace. 53
Errors '=' is not followed by whitespace. 53
Errors Missing a Javadoc comment. 54
Errors '=' is not preceded with whitespace. 54
Errors '=' is not followed by whitespace. 54
Errors Line has trailing spaces. 55
Errors Missing a Javadoc comment. 56
Errors Missing a Javadoc comment. 57
Errors Line has trailing spaces. 58
Errors Line has trailing spaces. 61
Errors Line has trailing spaces. 62
Errors Method 'getIdentity' is not designed for extension - needs to be abstract, final or empty. 91
Errors Method 'setIdentity' is not designed for extension - needs to be abstract, final or empty. 101
Errors Method 'addRelationship' is not designed for extension - needs to be abstract, final or empty. 110
Errors Method 'hasRelationship' is not designed for extension - needs to be abstract, final or empty. 125
Errors 'relations' hides a field. 148
Errors Method 'getMoleculeRenderer' is not designed for extension - needs to be abstract, final or empty. 158
Errors Method 'setMoleculeRenderer' is not designed for extension - needs to be abstract, final or empty. 168
Errors Method 'getDrawing' is not designed for extension - needs to be abstract, final or empty. 179
Errors 'moleculeRenderer' hides a field. 180
Errors Missing a Javadoc comment. 190
Errors Missing a Javadoc comment. 199
Errors Method 'equals' is not designed for extension - needs to be abstract, final or empty. 216
Errors Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. 257
Errors '36697' is a magic number. 259
Errors Line has trailing spaces. 261
Errors First sentence should end with a period. 262
Errors Line has trailing spaces. 264
Errors Method 'getMolecule' is not designed for extension - needs to be abstract, final or empty. 270
Errors Line has trailing spaces. 276
Errors First sentence should end with a period. 277
Errors Line has trailing spaces. 278
Errors Line has trailing spaces. 284
Errors Method 'setMolecule' is not designed for extension - needs to be abstract, final or empty. 285
Errors Parameter mol should be final. 285
Errors Expected @param tag for 'mol'. 285
Errors '{' is not preceded with whitespace. 285
Errors Line contains a tab character. 286
Errors '=' is not preceded with whitespace. 286
Errors '=' is not followed by whitespace. 286
Errors Line has trailing spaces. 287
Errors Line contains a tab character. 287
Errors Line has trailing spaces. 289
Errors Line has trailing spaces. 290
Errors Method 'getAttribute' is not designed for extension - needs to be abstract, final or empty. 300
Errors Line contains a tab character. 302
Errors Line contains a tab character. 304
Errors ')' is preceded with whitespace. 304
Errors Line has trailing spaces. 306
Errors First sentence should end with a period. 307
Errors Line has trailing spaces. 310
Errors Method 'getDimension' is not designed for extension - needs to be abstract, final or empty. 313
Errors '{' is not preceded with whitespace. 313
Errors Line contains a tab character. 314
Errors Line has trailing spaces. 315
Errors Method 'setAttribute' is not designed for extension - needs to be abstract, final or empty. 326
Errors Line contains a tab character. 327
Errors '(' is followed by whitespace. 327
Errors ')' is preceded with whitespace. 327
Errors Line contains a tab character. 328
Errors ',' is not followed by whitespace. 328
Errors Line has trailing spaces. 330
Errors Line has trailing spaces. 331
Errors Line has trailing spaces. 332
Errors Line has trailing spaces. 333
Errors Line has trailing spaces. 334
Errors Missing a Javadoc comment. 335
Errors '<' is not preceded with whitespace. 335
Errors '<' is not followed by whitespace. 335
Errors '>' is not preceded with whitespace. 335
Errors '{' is not preceded with whitespace. 335
Errors Line contains a tab character. 336
Errors '<' is not preceded with whitespace. 336
Errors '<' is not followed by whitespace. 336
Errors '>' is not preceded with whitespace. 336
Errors '>' is not followed by whitespace. 336
Errors Line contains a tab character. 338
Errors Line contains a tab character. 340
Errors 'while' is not followed by whitespace. 340
Errors '{' is not preceded with whitespace. 340
Errors Line contains a tab character. 341
Errors '=' is not followed by whitespace. 341
Errors 'cast' is not followed by whitespace. 341
Errors Line contains a tab character. 342
Errors 'if' is not followed by whitespace. 342
Errors '{' is not preceded with whitespace. 342
Errors Line contains a tab character. 343
Errors Line has trailing spaces. 344
Errors Line contains a tab character. 344
Errors Line contains a tab character. 345
Errors Line has trailing spaces. 346
Errors Line contains a tab character. 346
Errors Line contains a tab character. 347
Errors Line contains a tab character. 348
Errors Line has trailing spaces. 350
Errors Method 'getX' is not designed for extension - needs to be abstract, final or empty. 356
Errors Line contains a tab character. 357
Errors Line has trailing spaces. 359
Errors Missing a Javadoc comment. 360
Errors '<' is not preceded with whitespace. 360
Errors '<' is not followed by whitespace. 360
Errors '>' is not preceded with whitespace. 360
Errors Variable 'childList' must be private and have accessor methods. 360
Errors '=' is not preceded with whitespace. 360
Errors '=' is not followed by whitespace. 360
Errors Method 'setX' is not designed for extension - needs to be abstract, final or empty. 365
Errors Parameter newX should be final. 365
Errors Line contains a tab character. 366
Errors 'if' is not followed by whitespace. 366
Errors '{' is not preceded with whitespace. 366
Errors Line contains a tab character. 367
Errors Line contains a tab character. 368
Errors '=' is not preceded with whitespace. 368
Errors '=' is not followed by whitespace. 368
Errors Line contains a tab character. 370
Errors 'else' is not preceded with whitespace. 370
Errors '}' is not followed by whitespace. 370
Errors 'else' is not followed by whitespace. 370
Errors '{' is not preceded with whitespace. 370
Errors Line contains a tab character. 372
Errors '=' is not followed by whitespace. 372
Errors '-' is not preceded with whitespace. 372
Errors ';' is preceded with whitespace. 372
Errors Line contains a tab character. 373
Errors 'if' construct must use '{}'s. 374
Errors Line contains a tab character. 374
Errors 'if' is not followed by whitespace. 374
Errors '==' is not preceded with whitespace. 374
Errors '==' is not followed by whitespace. 374
Errors Line contains a tab character. 375
Errors Line contains a tab character. 376
Errors 'for' is not followed by whitespace. 376
Errors ':' is not preceded with whitespace. 376
Errors '{' is not preceded with whitespace. 376
Errors Line contains a tab character. 378
Errors 'cast' is not followed by whitespace. 378
Errors Line contains a tab character. 379
Errors Line contains a tab character. 380
Errors Line contains a tab character. 381
Errors Line has trailing spaces. 383
Errors Line has trailing spaces. 384
Errors Method 'getY' is not designed for extension - needs to be abstract, final or empty. 390
Errors Line contains a tab character. 391
Errors Method 'setY' is not designed for extension - needs to be abstract, final or empty. 398
Errors Parameter newY should be final. 398
Errors Line contains a tab character. 399
Errors 'if' is not followed by whitespace. 399
Errors '{' is not preceded with whitespace. 399
Errors Line contains a tab character. 400
Errors Line contains a tab character. 401
Errors Line contains a tab character. 403
Errors 'else' is not preceded with whitespace. 403
Errors '}' is not followed by whitespace. 403
Errors 'else' is not followed by whitespace. 403
Errors '{' is not preceded with whitespace. 403
Errors Line contains a tab character. 405
Errors '-' is not preceded with whitespace. 405
Errors '-' is not followed by whitespace. 405
Errors Line contains a tab character. 406
Errors 'if' construct must use '{}'s. 407
Errors Line contains a tab character. 407
Errors 'if' is not followed by whitespace. 407
Errors '==' is not preceded with whitespace. 407
Errors '==' is not followed by whitespace. 407
Errors Line contains a tab character. 408
Errors Line has trailing spaces. 409
Errors Line contains a tab character. 409
Errors Line contains a tab character. 410
Errors 'for' is not followed by whitespace. 410
Errors ':' is not preceded with whitespace. 410
Errors '{' is not preceded with whitespace. 410
Errors Line contains a tab character. 411
Errors 'cast' is not followed by whitespace. 411
Errors Line contains a tab character. 412
Errors Line contains a tab character. 413
Errors Line contains a tab character. 414
Errors Line has trailing spaces. 417
Errors Line has trailing spaces. 418
Errors Line has trailing spaces. 419
Errors Line has trailing spaces. 420
Errors Line has trailing spaces. 421
Errors Line has trailing spaces. 422
Errors Line has trailing spaces. 423
Errors Line has trailing spaces. 424
Errors Line has trailing spaces. 425
Errors Line has trailing spaces. 426
Errors Line has trailing spaces. 427
Errors Line has trailing spaces. 428
Errors Line has trailing spaces. 429

org/molwind/chemical/model/ChemicalWorld.java

Violation Message Line
Errors Missing a Javadoc comment. 37
Errors Missing a Javadoc comment. 38
Errors Method 'addFile' is not designed for extension - needs to be abstract, final or empty. 71
Errors Method 'getEntityIterator' is not designed for extension - needs to be abstract, final or empty. 81
Errors Method 'getTileGenerator' is not designed for extension - needs to be abstract, final or empty. 93
Errors '{' is not preceded with whitespace. 93
Errors 'cast' is not followed by whitespace. 97

org/molwind/chemical/model/SubstructureResolver.java

Violation Message Line
Errors Line has trailing spaces. 44
Errors Line has trailing spaces. 45
Errors Missing a Javadoc comment. 46
Errors Missing a Javadoc comment. 47
Errors Line has trailing spaces. 48
Errors Missing a Javadoc comment. 49
Errors Line has trailing spaces. 50
Errors Missing a Javadoc comment. 51
Errors Method 'getParentName' is not designed for extension - needs to be abstract, final or empty. 57
Errors '{' is not preceded with whitespace. 57
Errors Line contains a tab character. 59
Errors Method 'setParentName' is not designed for extension - needs to be abstract, final or empty. 66
Errors Parameter newParentName should be final. 66
Errors Line contains a tab character. 67
Errors Line has trailing spaces. 70
Errors Line has trailing spaces. 89
Errors Missing a Javadoc comment. 91
Errors Parameter molecule should be final. 91
Errors '{' is not preceded with whitespace. 91
Errors 'if' construct must use '{}'s. 92
Errors Line contains a tab character. 92
Errors 'if' is not followed by whitespace. 92
Errors '==' is not preceded with whitespace. 92
Errors '==' is not followed by whitespace. 92
Errors Line has trailing spaces. 93
Errors Line contains a tab character. 93
Errors Line contains a tab character. 94
Errors Line contains a tab character. 95
Errors Line contains a tab character. 96
Errors Line contains a tab character. 97
Errors Line contains a tab character. 98
Errors Line contains a tab character. 99
Errors Line has trailing spaces. 100
Errors Line contains a tab character. 100
Errors Line has trailing spaces. 101
Errors Line contains a tab character. 101
Errors Line has trailing spaces. 102
Errors Line contains a tab character. 102
Errors Line has trailing spaces. 104
Errors Line has trailing spaces. 105
Errors Missing a Javadoc comment. 108
Errors Missing a Javadoc comment. 118
Errors Line has trailing spaces. 130
Errors Line contains a tab character. 130
Errors Line contains a tab character. 131
Errors Line contains a tab character. 132
Errors Line has trailing spaces. 133
Errors Line contains a tab character. 133
Errors Line contains a tab character. 134
Errors '+' is not preceded with whitespace. 134
Errors '+' is not followed by whitespace. 134
Errors ',' is not followed by whitespace. 138
Errors Method 'related' is not designed for extension - needs to be abstract, final or empty. 155
Errors Line has trailing spaces. 172
Errors Line contains a tab character. 172
Errors Line has trailing spaces. 173
Errors Line contains a tab character. 173
Errors Line contains a tab character. 174
Errors Method 'resolve' is not designed for extension - needs to be abstract, final or empty. 208
Errors Method 'analyze' is not designed for extension - needs to be abstract, final or empty. 226
Errors Method 'identical' is not designed for extension - needs to be abstract, final or empty. 263

org/molwind/chemical/model/package.html

Violation Message Line
Errors Missing package documentation file. 0

org/molwind/chemical/view/ChemicalTile.java

Violation Message Line
Errors Missing a Javadoc comment. 43
Errors Missing a Javadoc comment. 44
Errors Method 'getWorldName' is not designed for extension - needs to be abstract, final or empty. 63
Errors Method 'setWorldName' is not designed for extension - needs to be abstract, final or empty. 73
Errors Method 'getTempDir' is not designed for extension - needs to be abstract, final or empty. 85
Errors 'worldName' hides a field. 92
Errors Method 'setTempDir' is not designed for extension - needs to be abstract, final or empty. 120
Errors Missing a Javadoc comment. 125
Errors Missing a Javadoc comment. 131
Errors Missing a Javadoc comment. 141
Errors Missing a Javadoc comment. 150
Errors Missing a Javadoc comment. 157
Errors Missing a Javadoc comment. 166
Errors '420' is a magic number. 167
Errors '420' is a magic number. 167
Errors '30' is a magic number. 171
Errors '420' is a magic number. 183
Errors '420' is a magic number. 184
Errors '420' is a magic number. 187
Errors Method 'writeTo' is not designed for extension - needs to be abstract, final or empty. 200
Errors Missing a Javadoc comment. 220

org/molwind/chemical/view/ChemicalTileGenerator.java

Violation Message Line
Errors Missing a Javadoc comment. 41
Errors Missing a Javadoc comment. 43
Errors Missing a Javadoc comment. 55
Errors Missing a Javadoc comment. 65
Errors Line contains a tab character. 67
Errors '(' is followed by whitespace. 67
Errors ')' is preceded with whitespace. 67
Errors Line is longer than 80 characters. 68
Errors Line contains a tab character. 68
Errors '(' is followed by whitespace. 68
Errors ')' is preceded with whitespace. 68
Errors Method 'generateTile' is not designed for extension - needs to be abstract, final or empty. 83
Errors Line has trailing spaces. 85
Errors Line contains a tab character. 85

org/molwind/chemical/view/ChemicalTopologyManager.java

Violation Message Line
Errors Unused import - java.util.List. 21
Errors Unused import - java.util.Collection. 25
Errors Unused import - org.molwind.graph.EntityGraph. 30
Errors Unused import - org.molwind.view.TopologyManager. 37
Errors Unused import - org.molwind.model.PlacedWorldEntity. 39
Errors Unused import - org.openscience.cdk.tools.MFAnalyser. 43
Errors Unused import - org.openscience.cdk.interfaces.IMolecule. 44
Errors Unused import - edu.uci.ics.jung.algorithms.layout.AbstractLayout. 49
Errors Line has trailing spaces. 52
Errors Unused import - edu.uci.ics.jung.graph.Graph. 52
Errors Unused import - edu.uci.ics.jung.visualization.BasicVisualizationServer. 54
Errors Missing a Javadoc comment. 67
Errors Missing a Javadoc comment. 68
Errors Missing a Javadoc comment. 69
Errors Line contains a tab character. 75
Errors Line has trailing spaces. 78
Errors Line has trailing spaces. 79
Errors Line is longer than 80 characters. 80
Errors Missing a Javadoc comment. 80
Errors '<' is not preceded with whitespace. 80
Errors '<' is not followed by whitespace. 80
Errors ',' is not followed by whitespace. 80
Errors '>' is not preceded with whitespace. 80
Errors Parameter entityArray should be final. 80
Errors '{' is not preceded with whitespace. 80
Errors Line is longer than 80 characters. 81
Errors Line contains a tab character. 81
Errors '<' is not preceded with whitespace. 81
Errors '<' is not followed by whitespace. 81
Errors ',' is not followed by whitespace. 81
Errors '>' is not preceded with whitespace. 81
Errors '<' is not preceded with whitespace. 81
Errors '<' is not followed by whitespace. 81
Errors ',' is not followed by whitespace. 81
Errors '>' is not preceded with whitespace. 81
Errors '>' is not followed by whitespace. 81
Errors Line has trailing spaces. 82
Errors Line contains a tab character. 82
Errors Line contains a tab character. 83
Errors 'for' is not followed by whitespace. 83
Errors ';' is not followed by whitespace. 83
Errors '<' is not preceded with whitespace. 83
Errors '<' is not followed by whitespace. 83
Errors ';' is not followed by whitespace. 83
Errors '{' is not preceded with whitespace. 83
Errors Line contains a tab character. 84
Errors Line contains a tab character. 85
Errors 'for' is not followed by whitespace. 85
Errors '+' is not preceded with whitespace. 85
Errors '+' is not followed by whitespace. 85
Errors ';' is not followed by whitespace. 85
Errors '<' is not preceded with whitespace. 85
Errors '<' is not followed by whitespace. 85
Errors ';' is not followed by whitespace. 85
Errors '{' is not preceded with whitespace. 85
Errors Line is longer than 80 characters. 86
Errors Line contains a tab character. 86
Errors '<' is not preceded with whitespace. 86
Errors '<' is not followed by whitespace. 86
Errors '>' is not preceded with whitespace. 86
Errors '<' is not preceded with whitespace. 86
Errors '<' is not followed by whitespace. 86
Errors '>' is not preceded with whitespace. 86
Errors '>' is not followed by whitespace. 86
Errors ',' is not followed by whitespace. 86
Errors Line is longer than 80 characters. 87
Errors Line contains a tab character. 87
Errors '+' is not preceded with whitespace. 87
Errors Line is longer than 80 characters. 88
Errors Line contains a tab character. 88
Errors ',' is not followed by whitespace. 88
Errors ',' is not followed by whitespace. 88
Errors Line contains a tab character. 89
Errors ',' is not followed by whitespace. 89
Errors ',' is not followed by whitespace. 89
Errors Line has trailing spaces. 90
Errors Line contains a tab character. 90
Errors Line contains a tab character. 91
Errors Line contains a tab character. 92
Errors Line has trailing spaces. 93
Errors Line contains a tab character. 93
Errors Line contains a tab character. 94
Errors Line has trailing spaces. 95
Errors Line contains a tab character. 95
Errors Line contains a tab character. 96
Errors Line has trailing spaces. 97
Errors Line contains a tab character. 97
Errors Line has trailing spaces. 99
Errors Line is longer than 80 characters. 100
Errors Missing a Javadoc comment. 100
Errors Parameter graph should be final. 100
Errors '<' is not preceded with whitespace. 100
Errors '<' is not followed by whitespace. 100
Errors ',' is not followed by whitespace. 100
Errors '>' is not preceded with whitespace. 100
Errors ',' is not followed by whitespace. 100
Errors Parameter vertex should be final. 100
Errors '{' is not preceded with whitespace. 100
Errors Line is longer than 80 characters. 101
Errors Line contains a tab character. 101
Errors Line contains a tab character. 102
Errors Line contains a tab character. 103
Errors 'for' is not followed by whitespace. 103
Errors ':' is not preceded with whitespace. 103
Errors ':' is not followed by whitespace. 103
Errors '{' is not preceded with whitespace. 103
Errors Line contains a tab character. 104
Errors '=' is not followed by whitespace. 104
Errors 'cast' is not followed by whitespace. 104
Errors Line contains a tab character. 105
Errors '=' is not preceded with whitespace. 105
Errors '=' is not followed by whitespace. 105
Errors Line contains a tab character. 106
Errors Line contains a tab character. 107
Errors Line has trailing spaces. 108
Errors Line contains a tab character. 108
Errors Line has trailing spaces. 109
Errors Line contains a tab character. 109
Errors Line contains a tab character. 110
Errors Line has trailing spaces. 112
Errors Method 'calculatePositions' is not designed for extension - needs to be abstract, final or empty. 114
Errors Missing a Javadoc comment. 114
Errors Line is longer than 80 characters. 121
Errors '=' is not followed by whitespace. 121
Errors Line has trailing spaces. 122
Errors Line contains a tab character. 122
Errors Line contains a tab character. 123
Errors Line has trailing spaces. 124
Errors Line contains a tab character. 124
Errors Line has trailing spaces. 125
Errors Line contains a tab character. 125
Errors Line contains a tab character. 126
Errors '(' is followed by whitespace. 126
Errors '+' is not preceded with whitespace. 126
Errors '+' is not followed by whitespace. 126
Errors ')' is preceded with whitespace. 126
Errors Line is longer than 80 characters. 128
Errors Line contains a tab character. 128
Errors '<' is not preceded with whitespace. 128
Errors '<' is not followed by whitespace. 128
Errors ',' is not followed by whitespace. 128
Errors '>' is not preceded with whitespace. 128
Errors '<' is not preceded with whitespace. 128
Errors '<' is not followed by whitespace. 128
Errors ',' is not followed by whitespace. 128
Errors '>' is not preceded with whitespace. 128
Errors '>' is not followed by whitespace. 128
Errors '{' is not preceded with whitespace. 128
Errors Line contains a tab character. 129
Errors Parameter edge should be final. 129
Errors '{' is not preceded with whitespace. 129
Errors Line contains a tab character. 130
Errors Line contains a tab character. 131
Errors Line contains a tab character. 132
Errors Line contains a tab character. 133
Errors '1000' is a magic number. 133
Errors Line contains a tab character. 135
Errors 'for' is not followed by whitespace. 135
Errors '-' is not preceded with whitespace. 135
Errors '-' is not followed by whitespace. 135
Errors ';' is not followed by whitespace. 135
Errors '>' is not preceded with whitespace. 135
Errors '>' is not followed by whitespace. 135
Errors ';' is not followed by whitespace. 135
Errors '{' is not preceded with whitespace. 135
Errors Line contains a tab character. 136
Errors '-' is not preceded with whitespace. 136
Errors '-' is not followed by whitespace. 136
Errors Line contains a tab character. 137
Errors Line has trailing spaces. 138
Errors Line contains a tab character. 138
Errors Line is longer than 80 characters. 139
Errors Line contains a tab character. 139
Errors '<' is not preceded with whitespace. 139
Errors '<' is not followed by whitespace. 139
Errors ',' is not followed by whitespace. 139
Errors '>' is not preceded with whitespace. 139
Errors ',' is not followed by whitespace. 139
Errors ',' is not followed by whitespace. 139
Errors Line contains a tab character. 140
Errors '<' is not preceded with whitespace. 140
Errors '<' is not followed by whitespace. 140
Errors ',' is not followed by whitespace. 140
Errors '>' is not preceded with whitespace. 140
Errors '>' is not followed by whitespace. 140
Errors Line contains a tab character. 141
Errors Line contains a tab character. 142
Errors '<' is not preceded with whitespace. 142
Errors '<' is not followed by whitespace. 142
Errors ',' is not followed by whitespace. 142
Errors '>' is not preceded with whitespace. 142
Errors '>' is not followed by whitespace. 142
Errors Line has trailing spaces. 143
Errors Line contains a tab character. 143
Errors Line has trailing spaces. 144
Errors Line contains a tab character. 144
Errors 'for' construct must use '{}'s. 145
Errors Line contains a tab character. 145
Errors 'for' is not followed by whitespace. 145
Errors ':' is not preceded with whitespace. 145
Errors ':' is not followed by whitespace. 145
Errors Line contains a tab character. 146
Errors Line has trailing spaces. 147
Errors Line contains a tab character. 147
Errors 'for' construct must use '{}'s. 148
Errors Line contains a tab character. 148
Errors 'for' is not followed by whitespace. 148
Errors ':' is not preceded with whitespace. 148
Errors ':' is not followed by whitespace. 148
Errors Line contains a tab character. 149
Errors Line has trailing spaces. 150
Errors Line contains a tab character. 150
Errors Line is longer than 80 characters. 151
Errors Line contains a tab character. 151
Errors '<' is not preceded with whitespace. 151
Errors '<' is not followed by whitespace. 151
Errors ',' is not followed by whitespace. 151
Errors '>' is not preceded with whitespace. 151
Errors '<' is not preceded with whitespace. 151
Errors '<' is not followed by whitespace. 151
Errors ',' is not followed by whitespace. 151
Errors '>' is not preceded with whitespace. 151
Errors '>' is not followed by whitespace. 151
Errors ',' is not followed by whitespace. 151
Errors Line contains a tab character. 152
Errors Line contains a tab character. 153
Errors '300' is a magic number. 153
Errors Line contains a tab character. 154
Errors ',' is not followed by whitespace. 154
Errors Line contains a tab character. 155
Errors 'for' construct must use '{}'s. 156
Errors Line contains a tab character. 156
Errors 'for' is not followed by whitespace. 156
Errors ';' is not followed by whitespace. 156
Errors '<' is not preceded with whitespace. 156
Errors '100' is a magic number. 156
Errors '<' is not followed by whitespace. 156
Errors ';' is not followed by whitespace. 156
Errors Line contains a tab character. 157
Errors Line is longer than 80 characters. 158
Errors Line contains a tab character. 158
Errors Line contains a tab character. 159
Errors 'for' is not followed by whitespace. 159
Errors ':' is not preceded with whitespace. 159
Errors ':' is not followed by whitespace. 159
Errors '{' is not preceded with whitespace. 159
Errors Line is longer than 80 characters. 160
Errors Line contains a tab character. 160
Errors 'cast' is not followed by whitespace. 160
Errors Line contains a tab character. 161
Errors Line has trailing spaces. 162
Errors Line contains a tab character. 162
Errors Line has trailing spaces. 163
Errors Line contains a tab character. 163
Errors Line is longer than 80 characters. 164
Errors Line contains a tab character. 164
Errors Line contains a tab character. 165
Errors 'try' is not followed by whitespace. 165
Errors '{' is not preceded with whitespace. 165
Errors Line contains a tab character. 166
Errors 'for' is not followed by whitespace. 166
Errors '{' is not preceded with whitespace. 166
Errors Line contains a tab character. 167
Errors ',' is not followed by whitespace. 167
Errors Line has trailing spaces. 168
Errors Line contains a tab character. 168
Errors Line contains a tab character. 169
Errors Line contains a tab character. 170
Errors 'for' is not followed by whitespace. 170
Errors ':' is not preceded with whitespace. 170
Errors ':' is not followed by whitespace. 170
Errors '{' is not preceded with whitespace. 170
Errors Line has trailing spaces. 171
Errors Line contains a tab character. 171
Errors Line contains a tab character. 172
Errors '+=' is not followed by whitespace. 172
Errors Line contains a tab character. 173
Errors Line contains a tab character. 174
Errors Line has trailing spaces. 175
Errors Line contains a tab character. 175
Errors 'if' construct must use '{}'s. 176
Errors Line contains a tab character. 176
Errors 'if' is not followed by whitespace. 176
Errors '40' is a magic number. 176
Errors Line contains a tab character. 177
Errors '40' is a magic number. 177
Errors Line contains a tab character. 178
Errors '*=' is not followed by whitespace. 178
Errors Line has trailing spaces. 179
Errors Line contains a tab character. 179
Errors Line is longer than 80 characters. 180
Errors Line contains a tab character. 180
Errors '<' is not preceded with whitespace. 180
Errors '<' is not followed by whitespace. 180
Errors ',' is not followed by whitespace. 180
Errors '>' is not preceded with whitespace. 180
Errors '<' is not preceded with whitespace. 180
Errors '<' is not followed by whitespace. 180
Errors ',' is not followed by whitespace. 180
Errors '>' is not preceded with whitespace. 180
Errors '>' is not followed by whitespace. 180
Errors Line has trailing spaces. 181
Errors Line contains a tab character. 181
Errors Line is longer than 80 characters. 182
Errors Line contains a tab character. 182
Errors Line has trailing spaces. 183
Errors Line contains a tab character. 183
Errors Line contains a tab character. 184
Errors Line contains a tab character. 185
Errors ',' is not followed by whitespace. 185
Errors Line has trailing spaces. 186
Errors Line contains a tab character. 186
Errors Line contains a tab character. 187
Errors ',' is not followed by whitespace. 187
Errors Line contains a tab character. 188
Errors Line contains a tab character. 189
Errors 'for' is not followed by whitespace. 189
Errors ':' is not preceded with whitespace. 189
Errors ':' is not followed by whitespace. 189
Errors '{' is not preceded with whitespace. 189
Errors Line has trailing spaces. 190
Errors Line contains a tab character. 190
Errors Line has trailing spaces. 191
Errors Line contains a tab character. 191
Errors Line has trailing spaces. 192
Errors Line contains a tab character. 192
Errors Line is longer than 80 characters. 193
Errors Line contains a tab character. 193
Errors 'cast' is not followed by whitespace. 193
Errors Line contains a tab character. 194
Errors Line has trailing spaces. 195
Errors Line contains a tab character. 195
Errors Line contains a tab character. 196
Errors Line contains a tab character. 197
Errors 'catch' is not preceded with whitespace. 197
Errors '}' is not followed by whitespace. 197
Errors 'catch' is not followed by whitespace. 197
Errors '{' is not preceded with whitespace. 197
Errors Must have at least one statement. 197
Errors Line has trailing spaces. 198
Errors Line contains a tab character. 198
Errors Line contains a tab character. 199
Errors Line contains a tab character. 200
Errors '*=' is not followed by whitespace. 200
Errors '4' is a magic number. 200
Errors Line contains a tab character. 201
Errors Line has trailing spaces. 202
Errors Line contains a tab character. 202
Errors Line contains a tab character. 203
Errors Line has trailing spaces. 204
Errors Line contains a tab character. 204
Errors Line contains a tab character. 205
Errors 'for' is not followed by whitespace. 205
Errors ':' is not preceded with whitespace. 205
Errors ':' is not followed by whitespace. 205
Errors '{' is not preceded with whitespace. 205
Errors Line contains a tab character. 206
Errors Line contains a tab character. 207
Errors Line contains a tab character. 208
Errors Line contains a tab character. 209
Errors Line has trailing spaces. 210
Errors Line contains a tab character. 210
Errors Line contains a tab character. 211
Errors Line has trailing spaces. 212
Errors Line contains a tab character. 212
Errors Method 'getVisibleEntities' is not designed for extension - needs to be abstract, final or empty. 225
Errors Missing a Javadoc comment. 232

org/molwind/chemical/view/MoleculeRendererFactory.java

Violation Message Line
Errors Class MoleculeRendererFactory should be declared as final. 29
Errors Missing a Javadoc comment. 31
Errors Missing a Javadoc comment. 33
Errors Missing a Javadoc comment. 35
Errors Missing a Javadoc comment. 39
Errors Missing a Javadoc comment. 99
Errors Missing a Javadoc comment. 103

org/molwind/chemical/view/SubstructureRenderer.java

Violation Message Line
Errors Missing a Javadoc comment. 56
Errors Method 'getZoom' is not designed for extension - needs to be abstract, final or empty. 64
Errors Method 'setZoom' is not designed for extension - needs to be abstract, final or empty. 74
Errors Missing a Javadoc comment. 79
Errors Missing a Javadoc comment. 85
Errors Missing a Javadoc comment. 128
Errors '6' is a magic number. 136
Errors '190' is a magic number. 137
Errors '255' is a magic number. 137
Errors '190' is a magic number. 137
Errors '16' is a magic number. 138
Errors '255' is a magic number. 139
Errors '255' is a magic number. 139
Errors '160' is a magic number. 139
Errors '255' is a magic number. 141
Errors '160' is a magic number. 141
Errors '160' is a magic number. 141
Errors Missing a Javadoc comment. 147
Errors '15' is a magic number. 155
Errors '10' is a magic number. 158
Errors '3' is a magic number. 162
Errors '10' is a magic number. 163
Errors '10' is a magic number. 163
Errors Missing a Javadoc comment. 168
Errors '15' is a magic number. 169
Errors '15' is a magic number. 170
Errors Missing a Javadoc comment. 173
Errors '12' is a magic number. 188
Errors '15' is a magic number. 205
Errors '15' is a magic number. 205
Errors Method 'getImage' is not designed for extension - needs to be abstract, final or empty. 226

org/molwind/chemical/view/package.html

Violation Message Line
Errors Missing package documentation file. 0