A B C D E F G H I L M O P R S T U V W X Y

A

AbstractMolwindWorld - Class in org.molwind.model

AbstractMolwindWorld represents an abstract molwind world description which can be used for sub-classing.

AbstractMolwindWorld(String) - Constructor for class org.molwind.model.AbstractMolwindWorld

Constructor of this class.

AbstractTile - Class in org.molwind.view

AbstractTile holds the entities visible on the tile.

AbstractTile(LayeredPosition) - Constructor for class org.molwind.view.AbstractTile

AbstractTopologyManager - Class in org.molwind.view

AbstractTopologyManager determines and places visible chemical structures.

AbstractTopologyManager() - Constructor for class org.molwind.view.AbstractTopologyManager

Creates a new topology manager to place chemical entities.

AbstractWorldLocator - Class in org.molwind.io

AbstractWorldLocator adds logging functionality which can be used by sub-classes.

AbstractWorldLocator() - Constructor for class org.molwind.io.AbstractWorldLocator

addBasePath(String) - Method in interface org.molwind.io.BasePathSupport

Adds a path to the base paths

addEdge(String, String, Relationship, int) - Method in class org.molwind.graph.DefaultEntityGraph

Adds a relationship edge between vertex vertexId1 and vertex vertexId2.

addEdge(String, String, Relationship, int) - Method in interface org.molwind.graph.EntityGraph

Adds a relationship edge between vertex vertexId1 and vertex vertexId2.

addEntities(Iterator) - Method in class org.molwind.view.AbstractTile

Adds entities to this tile.

addEntity(String, WorldEntity) - Method in class org.molwind.graph.DefaultEntityGraph

Adds an entity i.e.

addEntity(String, WorldEntity) - Method in interface org.molwind.graph.EntityGraph

Adds an entity i.e.

addRelationship(Relationship) - Method in class org.molwind.model.BaseWorldEntity

Adds a relationship object to this entity.

addTile(LayeredPosition, Tile) - Method in class org.molwind.view.Tiles

Adds a tile to the tile cache.

addWorldLocator(WorldLocator) - Method in class org.molwind.util.MolwindServerConfiguration

Adds a world locator used to find worlds.

addWorldPath(String) - Method in class org.molwind.util.MolwindServerConfiguration

Adds a search path for world data to locate.

after(String, String) - Static method in class org.molwind.util.Stringx

Tailors a source string to the string beginning after a given delimiter string.

afterLast(String, String) - Static method in class org.molwind.util.Stringx

Determines the string's portion after the last occurrence of the delimiter.

analyze(EntityGraphAnalyzer) - Method in class org.molwind.graph.DefaultEntityGraph

Analyzes the entity graph using the given analysis strategy.

analyze(EntityGraphAnalyzer) - Method in interface org.molwind.graph.EntityGraph

Analyzes the entity graph using the given analysis strategy.

analyze(EntityGraph, EntityVertex) - Method in interface org.molwind.graph.EntityGraphAnalyzer

Analyzes an entity graph.

B

BasePathSupport - Interface in org.molwind.io

BaseRelationship - Class in org.molwind.model

BaseRelationship specifies a basic relationship type.

BaseRelationship(WorldEntity, WorldEntity) - Constructor for class org.molwind.model.BaseRelationship

Creates a new relationship object.

BaseRelationship(WorldEntity) - Constructor for class org.molwind.model.BaseRelationship

Creates a new relationship object where the left argument is assigned at a later stage.

BaseWorldEntity - Class in org.molwind.model

BaseWorldEntity provides a basic implementation of a world entity.

BaseWorldEntity() - Constructor for class org.molwind.model.BaseWorldEntity

before(String, String) - Static method in class org.molwind.util.Stringx

Cuts a substring out of a source string ending at a given delimiter string.

C

color - Variable in class org.molwind.graph.DefaultEntityVertex

concat(String) - Static method in class org.molwind.util.Stringx

Concatenates a paragraph of text into a single line by removing line ends and unnecessary blanks (i.e.

ConfigException - Exception in org.molwind.util

ConfigException marks exceptions thrown while processing a configuration.

ConfigException() - Constructor for exception org.molwind.util.ConfigException

ConfigException constructor.

ConfigException(String) - Constructor for exception org.molwind.util.ConfigException

ConfigException constructor.

Configurable - Interface in org.molwind.util

Configurable tags objects to be configurable.

Configurator - Interface in org.molwind.util

Configurator interface defines a mechanism to configure objects.

configure(Configurator) - Method in class org.molwind.io.AbstractWorldLocator

Configures this object from a given configurator.

configure(Configurator) - Method in interface org.molwind.util.Configurable

Configures this object from a given configurator.

contains(WorldEntity) - Method in class org.molwind.model.PartOf

Tests whether the given entity has a part of relationship.

currentDateString(String) - Static method in class org.molwind.util.Stringx

Formats the current date according to the given format string.

D

debug(String, Throwable) - Static method in class org.molwind.util.MolwindLogger

debug(String) - Static method in class org.molwind.util.MolwindLogger

debug(Throwable) - Static method in class org.molwind.util.MolwindLogger

DEFAULT_INTERMEDIATE_LAYER - Static variable in class org.molwind.util.MolwindServerConfiguration

Default intermediate layer flag.

DEFAULT_MOLECULES_PER_LEVEL - Static variable in class org.molwind.util.MolwindServerConfiguration

Default maximum number of molecules per level.

DEFAULT_ZOOM - Static variable in class org.molwind.util.MolwindServerConfiguration

Default zoom factor.

DefaultEntityEdge - Class in org.molwind.graph

DefaultEntityEdge represents an edge in the entity graph.

DefaultEntityEdge(EntityVertex, EntityVertex, int) - Constructor for class org.molwind.graph.DefaultEntityEdge

DefaultEntityEdge constructor.

DefaultEntityEdge(DefaultEntityVertex, DefaultEntityVertex) - Constructor for class org.molwind.graph.DefaultEntityEdge

DefaultEntityEdge constructor.

DefaultEntityGraph - Class in org.molwind.graph

DefaultEntityGraph implements an EntityGraph using the JUNG graph lib.

DefaultEntityGraph() - Constructor for class org.molwind.graph.DefaultEntityGraph

Creates a new (empty) graph of entities.

DefaultEntityVertex - Class in org.molwind.graph

DefaultEntityVertex represents the default vertex of a DefaultEntityGraph object.

DefaultEntityVertex() - Constructor for class org.molwind.graph.DefaultEntityVertex

DefaultEntityVertex constructor, creates a new vertex.

deleteAll(String, String) - Static method in class org.molwind.util.Stringx

Deletes all occurrences of a substring from a source string.

deleteBetweenAll(String, String, String) - Static method in class org.molwind.util.Stringx

Deletes all occurrences of a substring between a left delimiter and a right delimiter string.

devideLayers() - Method in class org.molwind.graph.DefaultEntityGraph

Devides the graph into Layers

E

EntityEdge - Interface in org.molwind.graph

EntityEdge represents relationships of entities.

EntityGraph - Interface in org.molwind.graph

EntityGraph stores graphs of entities (= vertices) and relationships (= edges) among those.

EntityGraphAnalyzer - Interface in org.molwind.graph

EntityGraphAnalyzer implementations perform operations on an entity graph.

EntityVertex - Interface in org.molwind.graph

EntityVertex represents a vertex of an EntityGraph.

equals(Object) - Method in class org.molwind.model.BaseRelationship

Compares this relationship to another.

equals(Object) - Method in class org.molwind.model.LayeredPosition

Indicates whether some other layered position is "equal to" this one.

error(String, Throwable) - Static method in class org.molwind.util.MolwindLogger

error(String) - Static method in class org.molwind.util.MolwindLogger

error(Throwable) - Static method in class org.molwind.util.MolwindLogger

escapeChar(String) - Static method in class org.molwind.util.Stringx

Replaces in the given string all meta character sequences such as \n, \t etc.

escapeXmlAttributeValue(String) - Static method in class org.molwind.util.Stringx

Escapes all xml meta-characters in the given string by the corresponding entity char sequences.

existRelationship(Relationship) - Method in class org.molwind.model.BaseWorldEntity

Tests whether the given relationship already exists.

extract(String, String, String) - Static method in class org.molwind.util.Stringx

Extracts a substring from a source string between a left and a right delimiter string.

extractAll(String, String, String) - Static method in class org.molwind.util.Stringx

Extracts a substring from a source string between a left and a right delimiter string.

F

fatal(String, Throwable) - Static method in class org.molwind.util.MolwindLogger

fatal(String) - Static method in class org.molwind.util.MolwindLogger

fatal(Throwable) - Static method in class org.molwind.util.MolwindLogger

fill(char, int) - Static method in class org.molwind.util.Stringx

Constructs a string with the specified length that only consists of the given character.

findEntity(String) - Method in class org.molwind.graph.DefaultEntityGraph

Finds the given vertex id.

findEntity(String) - Method in interface org.molwind.graph.EntityGraph

Finds the given vertex id.

fractionDigits(String) - Static method in class org.molwind.util.Stringx

Counts the digits of the fraction of a number's string representation of a source string.

G

generateTile(LayeredPosition) - Method in interface org.molwind.model.TileGenerator

Generates a tile for the given position.

generateTile(LayeredPosition) - Method in interface org.molwind.view.TileGenerator

Generates a tile from the given position.

getAttribute(String) - Method in class org.molwind.model.BaseWorldEntity

Returns the value of the attribute with the given name.

getAttribute(String) - Method in interface org.molwind.model.WorldEntity

Returns the value of the attribute with the given name.

getClassName(Class) - Static method in class org.molwind.util.Stringx

Extracts the base class name (i.e.

getDateString(String, Date) - Static method in class org.molwind.util.Stringx

Formats a given date according to the format string.

getDefault(String, String) - Static method in class org.molwind.util.Stringx

If the given string is null the default value provided is returned.

getDimension() - Method in class org.molwind.model.BaseWorldEntity

Returns 0 for this kind of entity

getDimension() - Method in interface org.molwind.model.WorldEntity

Returns int for the bigness of the entity

getEdgeWeight() - Method in class org.molwind.graph.DefaultEntityEdge

Get the EdgeWeight value.

getEdgeWeight() - Method in interface org.molwind.graph.EntityEdge

Get the Weight value.

getEmptyImage() - Method in class org.molwind.view.AbstractTile

getEntity() - Method in class org.molwind.graph.DefaultEntityVertex

Get the Entity value.

getEntity() - Method in interface org.molwind.graph.EntityVertex

Get the Entity value.

getEntityCount() - Method in class org.molwind.view.AbstractTile

Returns the number of entities on this tile.

getEntityIterator() - Method in class org.molwind.model.AbstractMolwindWorld

Returns an iterator over the world's entities.

getEntityIterator() - Method in interface org.molwind.model.MolwindWorld

Returns an iterator over the world's entities.

getEntityIterator() - Method in class org.molwind.view.AbstractTile

Returns an iterator over the entities of this tile.

getEntityIterator() - Method in class org.molwind.view.AbstractTopologyManager

Get the EntityIterator value.

getGraph() - Method in class org.molwind.graph.DefaultEntityGraph

Get the Graph value.

getId() - Method in class org.molwind.graph.DefaultEntityVertex

Get the Id value.

getId() - Method in interface org.molwind.graph.EntityVertex

Get the Id value.

getImage(String) - Method in class org.molwind.io.ImageFileCache

getImage(File) - Method in class org.molwind.io.ImageFileCache

Returns the given image from the image file cache.

getImageCache() - Method in class org.molwind.io.ImageFileCache

Get the imageCache.

getImageType() - Method in class org.molwind.view.AbstractTile

Get the ImageType value.

getInstance() - Static method in class org.molwind.io.ImageFileCache

Returns the instance of the image file cache.

getInstance(ServletContext) - Static method in class org.molwind.util.MolwindLogger

Returns an instance of the logger facade (optionally) initialized with a servlet context.

getInstance() - Static method in class org.molwind.util.MolwindLogger

Returns an instance of the logger facade.

getInstance(String) - Static method in class org.molwind.util.MolwindServerConfiguration

Creates a new configuration object and initializes it with default values (lazily loaded).

getInstance() - Static method in class org.molwind.util.MolwindServerConfiguration

Creates a new configuration object and initializes it with default values (lazily loaded).

getInstance(String) - Static method in class org.molwind.view.Tiles

Returns an instance to the tiles storage which has been associated to the given world.

getLayer(int) - Method in class org.molwind.graph.DefaultEntityGraph

Get all vertices for the given layer

getLayer() - Method in class org.molwind.model.LayeredPosition

Get the Layer value.

getLayer() - Method in class org.molwind.model.PlacedWorldEntity

Get the Layer value.

getLayerCount() - Method in class org.molwind.graph.DefaultEntityGraph

Gives the count of Layers for the allocation levels

getLeft() - Method in class org.molwind.model.BaseRelationship

Gets the left entity.

getLeft() - Method in interface org.molwind.model.Relationship

Gets the left entity.

getLocator() - Static method in class org.molwind.io.MolwindLocator

Returns the standard world locator.

getMoleculesPerLevel() - Method in class org.molwind.util.MolwindServerConfiguration

Get the MoleculesPerLevel value.

getName() - Method in class org.molwind.model.AbstractMolwindWorld

Returns the name of the world.

getName() - Method in interface org.molwind.model.MolwindWorld

Returns the name of the world.

getParentName() - Method in interface org.molwind.model.RelationshipResolver

Get the ParentName value.

getPath() - Method in class org.molwind.util.MolwindServerConfiguration

Get the Path value.

getPosition() - Method in class org.molwind.graph.DefaultEntityVertex

Returns the position of the vertex

getPosition() - Method in interface org.molwind.graph.EntityVertex

Returns the position of the vertex

getPosition() - Method in interface org.molwind.model.Tile

Get the layered coordinates of this tile.

getPosition() - Method in class org.molwind.view.AbstractTile

Get the Position value.

getRelationship() - Method in class org.molwind.graph.DefaultEntityEdge

Get the Relationship value.

getRelationship() - Method in interface org.molwind.graph.EntityEdge

Get the Relationship value.

getRelationship(Relationship) - Method in class org.molwind.model.BaseWorldEntity

Searches the relationships for the given relationship.

getRelationshipResolver() - Method in class org.molwind.model.AbstractMolwindWorld

Returns a strategy object to resolve relationships among entities.

getRelationshipResolver() - Method in interface org.molwind.model.MolwindWorld

Returns a strategy object to resolve relationships among entities.

getRelationshipResolver() - Method in class org.molwind.view.AbstractTopologyManager

Get the RelationshipResolver value.

getRelationships() - Method in class org.molwind.model.BaseWorldEntity

Returns an iterator of relationship objects.

getRelationships() - Method in interface org.molwind.model.WorldEntity

Returns an iterator of relationship objects.

getRight() - Method in class org.molwind.model.BaseRelationship

Gets the right entity.

getRight() - Method in interface org.molwind.model.Relationship

Gets the right entity.

getServletContext() - Method in class org.molwind.util.MolwindServerConfiguration

Get the ServletContext value.

getTile(LayeredPosition) - Method in class org.molwind.view.Tiles

Returns a tile from the tile cache for the given position.

getTileGenerator() - Method in class org.molwind.model.AbstractMolwindWorld

Returns an instance of a tile generator.

getTileGenerator() - Method in interface org.molwind.model.MolwindWorld

Returns an instance of a tile generator.

getTopologyManager() - Method in class org.molwind.model.AbstractMolwindWorld

Get the TopologyManager value.

getTopologyManager() - Method in interface org.molwind.model.MolwindWorld

Returns a strategy object to determine visible entities and their positions.

getV1() - Method in class org.molwind.graph.DefaultEntityEdge

Get the V1 value.

getV1() - Method in interface org.molwind.graph.EntityEdge

Get the V1 value.

getV2() - Method in class org.molwind.graph.DefaultEntityEdge

Get the V2 value.

getV2() - Method in interface org.molwind.graph.EntityEdge

Get the V2 value.

getVerticePair() - Method in class org.molwind.graph.DefaultEntityEdge

Returns the vertices

getVerticePair() - Method in interface org.molwind.graph.EntityEdge

Returns the vertices

getVisibleEntities(LayeredPosition) - Method in class org.molwind.view.AbstractTopologyManager

Determines the visible entities for the given position.

getVisibleEntities(LayeredPosition) - Method in interface org.molwind.view.TopologyManager

Determines the visible entities for the given position.

getWorld() - Method in class org.molwind.view.Tiles

Get the World value.

getWorldLocators() - Method in class org.molwind.util.MolwindServerConfiguration

Returns an array of world locators.

getWorldName() - Method in class org.molwind.view.Tiles

Get the WorldName value.

getWorldNames() - Method in class org.molwind.io.AbstractWorldLocator

Returns a (possibly empty) list of locatable worlds

getWorldNames() - Method in interface org.molwind.io.WorldLocator

Returns a (possibly empty) list of locatable worlds

getWorldNames() - Method in class org.molwind.util.MolwindServerConfiguration

getWorldPaths() - Method in class org.molwind.util.MolwindServerConfiguration

Returns an array of search paths for worlds.

getX() - Method in class org.molwind.model.LayeredPosition

Get the X value.

getX() - Method in interface org.molwind.model.Place

Returns the x-coordinate.

getX() - Method in class org.molwind.model.PlacedWorldEntity

Returns the x-coordinate.

getY() - Method in class org.molwind.model.LayeredPosition

Get the Y value.

getY() - Method in interface org.molwind.model.Place

Returns the y-coordinate.

getY() - Method in class org.molwind.model.PlacedWorldEntity

Returns the y-coordinate.

getZoom() - Method in class org.molwind.util.MolwindServerConfiguration

Get the Zoom value.

H

hashCode() - Method in class org.molwind.model.BaseRelationship

Returns a hash code value for this relationship.

hashCode() - Method in class org.molwind.model.LayeredPosition

Returns a hash code value for this layered position.

I

identical(WorldEntity, WorldEntity) - Method in interface org.molwind.model.Identity

Tests whether two world entities are identical.

Identity - Interface in org.molwind.model

Identity interface represents a test to check if two worlds are identical.

ImageFileCache - Class in org.molwind.io

Stores generated images in the cache.

ImageFileCache() - Constructor for class org.molwind.io.ImageFileCache

Empty constructer to build a Cache with the maximum size of 100

ImageFileCache(int) - Constructor for class org.molwind.io.ImageFileCache

Constructor to build a Cache with the given size

info(String, Throwable) - Static method in class org.molwind.util.MolwindLogger

info(String) - Static method in class org.molwind.util.MolwindLogger

info(Throwable) - Static method in class org.molwind.util.MolwindLogger

isHexDigit(char) - Static method in class org.molwind.util.Stringx

Checks whether a given char can be part of a hex string.

isIdentifier(String) - Static method in class org.molwind.util.Stringx

Checks whether a given string follows the rules for identifiers or not.

isIntermediateLayer() - Method in class org.molwind.util.MolwindServerConfiguration

Get the IntermediateLayer value.

isOrigin() - Method in class org.molwind.model.LayeredPosition

Tests whether this object represents the origin position (0,0,0).

isTransitive() - Method in class org.molwind.model.BaseRelationship

Returns whether this relationship supports transitivity.

isTransitive() - Method in interface org.molwind.model.Relationship

Returns whether this relationship supports transitivity.

isVertexIncluded(EntityVertex) - Method in class org.molwind.graph.DefaultEntityEdge

Checks if the vertex is part of this Edge

iterator() - Method in class org.molwind.graph.DefaultEntityGraph

Returns an iterator over a set of elements.

L

LayeredPosition - Class in org.molwind.model

LayeredPosition provides an implementation of a world postion.

LayeredPosition(double, double, int) - Constructor for class org.molwind.model.LayeredPosition

LayeredPosition constructor.

left(WorldEntity) - Static method in class org.molwind.model.BaseRelationship

Returns a new relationship object with the given entity assigned as the left argument.

localDate() - Static method in class org.molwind.util.Stringx

Formats the current date according to local formating conventions.

localDate(long) - Static method in class org.molwind.util.Stringx

Formats the current date according to local formating conventions.

localMediumDate(long) - Static method in class org.molwind.util.Stringx

Formats the current date according to local formating conventions to display medium format length.

localTime() - Static method in class org.molwind.util.Stringx

Formats the current time according to local formating conventions.

localTime(long) - Static method in class org.molwind.util.Stringx

Formats the current time according to local formating conventions.

locateWorld(String) - Method in class org.molwind.io.AbstractWorldLocator

Locates a world with the given name.

locateWorld(String) - Method in interface org.molwind.io.WorldLocator

Locates a world with the given name.

locateWorld(String) - Method in class org.molwind.util.MolwindServerConfiguration

Locates a world with the given name.

M

matches(Relationship) - Method in class org.molwind.model.BaseRelationship

Match the given relationship.

matches(Relationship) - Method in interface org.molwind.model.PartialMatch

Match the given relationship.

MolwindException - Exception in org.molwind

MolwindException represents a general Molwind exception.

MolwindException() - Constructor for exception org.molwind.MolwindException

Constructs a new exception with null as its detail message.

MolwindException(String) - Constructor for exception org.molwind.MolwindException

Constructs a new exception with the specified detail message.

MolwindException(String, Throwable) - Constructor for exception org.molwind.MolwindException

Constructs a new exception with the specified detail message and cause.

MolwindException(Throwable) - Constructor for exception org.molwind.MolwindException

Constructs a new exception with the specified cause and a detail message of cause == null ? null : cause.toString() (which typically contains the class and detail message of cause).

MolwindLocator - Class in org.molwind.io

MolwindLocator singleton holds the default locator.

MolwindLogger - Class in org.molwind.util

MolwindLogger facade delegates log requests to the underlying logger(s).

MolwindServerConfiguration - Class in org.molwind.util

Holds the configuration options of the molwind server.

MolwindWorld - Interface in org.molwind.model

MolwindWorld interface represents a molwind world description.

O

org.molwind - package org.molwind

org.molwind.graph - package org.molwind.graph

org.molwind.io - package org.molwind.io

org.molwind.model - package org.molwind.model

org.molwind.util - package org.molwind.util

org.molwind.view - package org.molwind.view

ORIGIN - Static variable in class org.molwind.model.LayeredPosition

P

parseDate(String) - Static method in class org.molwind.util.Stringx

Parses a date string according to local formating conventions.

parseDate(String, String) - Static method in class org.molwind.util.Stringx

Parses a date string conforming to a given date format pattern.

parseTime(String) - Static method in class org.molwind.util.Stringx

Parses a time string according to local formating conventions.

PartialMatch - Interface in org.molwind.model

PartialMatch represents an interface for relationships that can be matched partially.

PartOf - Class in org.molwind.model

PartOf relationship type.

PartOf(WorldEntity, WorldEntity) - Constructor for class org.molwind.model.PartOf

Creates a new partof relationship object.

Place - Interface in org.molwind.model

Place represents things that can be placed on the world somewhere.

PlacedWorldEntity - Class in org.molwind.model

Provides a basic implementation for a placed world entity.

PlacedWorldEntity() - Constructor for class org.molwind.model.PlacedWorldEntity

putAttribute(String, Object) - Method in class org.molwind.model.BaseWorldEntity

Sets the value of the attribute with the given name.

putAttribute(String, Object) - Method in interface org.molwind.model.WorldEntity

Sets the value of the attribute with the given name.

putImage(File) - Method in class org.molwind.io.ImageFileCache

Puts a Buffered image to the Chache with the filename as key

R

related(WorldEntity, WorldEntity) - Method in interface org.molwind.model.RelationshipResolver

Augments the relationship between two entities.

Relationship - Interface in org.molwind.model

Relationship interface defines bidirectional relationships between entities.

RelationshipResolver - Interface in org.molwind.model

RelationshipResolver interface defines a strategy to resolve relationships among entities.

relationships - Variable in class org.molwind.model.BaseWorldEntity

removeBasePath(String) - Method in interface org.molwind.io.BasePathSupport

Removes the given path from the base paths

resolve() - Method in interface org.molwind.model.RelationshipResolver

Resolves the relationships by creating a graph of entity vertices and relationship edges.

right(WorldEntity) - Static method in class org.molwind.model.BaseRelationship

Returns a new relationship object with the given entity assigned as the right argument.

S

set(LRUMap) - Method in class org.molwind.io.ImageFileCache

Set the imageCache.

setDeltaX(double) - Method in class org.molwind.model.PlacedWorldEntity

Move y for delta

setDeltaY(double) - Method in class org.molwind.model.PlacedWorldEntity

Move y for delta

setEdgeWeight(int) - Method in class org.molwind.graph.DefaultEntityEdge

Set the EdgeWeight value.

setEntity(WorldEntity) - Method in class org.molwind.graph.DefaultEntityVertex

Set the Entity value.

setEntity(WorldEntity) - Method in interface org.molwind.graph.EntityVertex

Set the Entity value.

setEntityIterator(Iterator) - Method in class org.molwind.view.AbstractTopologyManager

Set the EntityIterator value.

setEntityIterator(Iterator) - Method in interface org.molwind.view.TopologyManager

Set the EntityIterator value.

setGraph(SparseGraph) - Method in class org.molwind.graph.DefaultEntityGraph

Set the Graph value.

setId(String) - Method in class org.molwind.graph.DefaultEntityVertex

Set the Id value.

setId(String) - Method in interface org.molwind.graph.EntityVertex

Set the Id value.

setImageType(String) - Method in class org.molwind.view.AbstractTile

Set the ImageType value.

setIntermediateLayer(boolean) - Method in class org.molwind.util.MolwindServerConfiguration

Set the IntermediateLayer value.

setLayer(int) - Method in class org.molwind.model.LayeredPosition

Set the Layer value.

setLayer(int) - Method in class org.molwind.model.PlacedWorldEntity

Set the Layer value.

setLeft(WorldEntity) - Method in class org.molwind.model.BaseRelationship

Set the Left value.

setLocator(WorldLocator) - Static method in class org.molwind.io.MolwindLocator

Sets the standard world locator.

setMoleculesPerLevel(int) - Method in class org.molwind.util.MolwindServerConfiguration

Set the MoleculesPerLevel value.

setName(String) - Method in class org.molwind.model.AbstractMolwindWorld

Set the Name value.

setPath(String) - Method in class org.molwind.util.MolwindServerConfiguration

Set the Path value.

setPosition(Point2D.Double) - Method in class org.molwind.graph.DefaultEntityVertex

Sets the layout position

setPosition(Point2D.Double) - Method in interface org.molwind.graph.EntityVertex

Sets the layout position

setPosition(LayeredPosition) - Method in class org.molwind.view.AbstractTile

Set the Position value.

setRelationship(Relationship) - Method in class org.molwind.graph.DefaultEntityEdge

Set the Relationship value.

setRelationship(Relationship) - Method in interface org.molwind.graph.EntityEdge

Set the Relationship value.

setRelationshipResolver(RelationshipResolver) - Method in class org.molwind.model.AbstractMolwindWorld

Set the RelationshipResolver value.

setRelationshipResolver(RelationshipResolver) - Method in class org.molwind.view.AbstractTopologyManager

Set the RelationshipResolver value.

setRelationshipResolver(RelationshipResolver) - Method in interface org.molwind.view.TopologyManager

Set the RelationshipResolver value.

setRight(WorldEntity) - Method in class org.molwind.model.BaseRelationship

Set the Right value.

setServletContext(ServletContext) - Method in class org.molwind.util.MolwindServerConfiguration

Set the ServletContext value.

setTopologyManager(TopologyManager) - Method in class org.molwind.model.AbstractMolwindWorld

Set the TopologyManager value.

setup(Configurable) - Method in interface org.molwind.util.Configurator

Configures the given object.

setup(Configurable) - Method in class org.molwind.util.MolwindServerConfiguration

Configures the given object.

setWorld(MolwindWorld) - Method in class org.molwind.view.Tiles

Set the World value.

setWorldName(String) - Method in class org.molwind.view.Tiles

Set the WorldName value.

setX(int) - Method in class org.molwind.model.LayeredPosition

Set the X value.

setX(double) - Method in class org.molwind.model.PlacedWorldEntity

Set the X value.

setY(int) - Method in class org.molwind.model.LayeredPosition

Set the Y value.

setY(double) - Method in class org.molwind.model.PlacedWorldEntity

Set the Y value.

setZoom(double) - Method in class org.molwind.util.MolwindServerConfiguration

Set the Zoom value.

strapp(String, String) - Static method in class org.molwind.util.Stringx

Append a string to the source string if it has not been appended already.

strbreak(String, String, int) - Static method in class org.molwind.util.Stringx

Breaks up a string into smaller pieces of specified length appended by the given string.

strcut(String, String) - Static method in class org.molwind.util.Stringx

Discards all characters of a source string after a delimiter string.

Stringx - Class in org.molwind.util

The Stringx class provides a collection of static methods for extended string processing.

strnewline(String, int) - Static method in class org.molwind.util.Stringx

Breaks up a string into smaller pieces of specified length appended by a newline.

strtok(String, String) - Static method in class org.molwind.util.Stringx

Determines all tokens of a source string that are delimited by characters of a delimiter string.

strtok(String, String, boolean) - Static method in class org.molwind.util.Stringx

Determines all tokens of a source string that are delimited by characters of a delimiter string, optionally trims the tokens.

strtok(String) - Static method in class org.molwind.util.Stringx

Determines all tokens of a source string that are delimited by whitespaces.

strtrunc(String, int) - Static method in class org.molwind.util.Stringx

Truncates a string if it exceeds a certain length.

strtrunc(String, int, String) - Static method in class org.molwind.util.Stringx

Truncates a string if it exceeds a certain length and appends a given continuation string instead.

substitute(String, String, String) - Static method in class org.molwind.util.Stringx

Replaces one occurrence of a string to be substituted in a source string by a replacing string.

substituteAll(String, String, String) - Static method in class org.molwind.util.Stringx

Replaces all occurrences of a string to be substituted in a source string by a replacing string.

subtoken(String, int, String) - Static method in class org.molwind.util.Stringx

Extracts a substring from a source string beginning at a specified position and ending with a specific delimiter.

T

Tile - Interface in org.molwind.model

Tile interface represents information used for tile rendering.

Tile - Interface in org.molwind.view

Tile represents a visible tile of world wind.

TileException - Exception in org.molwind.view

TileException represents an exception generated by tile operations.

TileException() - Constructor for exception org.molwind.view.TileException

Constructs a new exception with null as its detail message.

TileException(String) - Constructor for exception org.molwind.view.TileException

Constructs a new exception with the specified detail message.

TileException(String, Throwable) - Constructor for exception org.molwind.view.TileException

Constructs a new exception with the specified detail message and cause.

TileException(Throwable) - Constructor for exception org.molwind.view.TileException

Constructs a new exception with the specified cause and a detail message of cause == null ? null : cause.toString() (which typically contains the class and detail message of cause).

TileGenerator - Interface in org.molwind.model

TileGenerator is a general model of a mechanism to generate tile information from molecular entities.

TileGenerator - Interface in org.molwind.view

TileGenerator interfaces defines a strategy to generate a world wind tile.

Tiles - Class in org.molwind.view

Tiles generates and manages the image tiles served to the client.

toBoolean(String, boolean) - Static method in class org.molwind.util.Stringx

Converts a String to a boolean value.

toColor(String) - Static method in class org.molwind.util.Stringx

Converts a color name or description like #FFCC00 into a color object.

toCRC(String) - Static method in class org.molwind.util.Stringx

Creates a crc checksum from a String.

toDouble(String, double) - Static method in class org.molwind.util.Stringx

Converts a String to a double value.

toFloat(String, float) - Static method in class org.molwind.util.Stringx

Converts a String to a float value.

toInt(String, int) - Static method in class org.molwind.util.Stringx

Converts a String to an int value.

toLong(String, long) - Static method in class org.molwind.util.Stringx

Converts a String to a long value.

TopologyManager - Interface in org.molwind.view

TopologyManager determines visible entities.

toProperties(String, String) - Static method in class org.molwind.util.Stringx

Creates a Properties object from a key-value pair string which looks something like item1 = value1; item2 = value2; ...

toString() - Method in class org.molwind.graph.DefaultEntityGraph

Writes a graph ml representation of this graph

toString() - Method in class org.molwind.graph.DefaultEntityVertex

VertexId to String

toString() - Method in class org.molwind.model.LayeredPosition

Returns a string representation of the object.

toStringList(Object[], String) - Static method in class org.molwind.util.Stringx

Creates a string consisting of the array's items separated by the given delimiter.

toStringList(Collection, String) - Static method in class org.molwind.util.Stringx

Creates a string consisting of the array's items separated by the given delimiter.

trimZero(String) - Static method in class org.molwind.util.Stringx

Removes all leading non-digits and zeros from a string.

U

update(File, ImageFileCache) - Method in class org.molwind.io.ImageFileCache

Updates the given Image in the image cache.

V

viewGraph(int) - Method in class org.molwind.graph.DefaultEntityGraph

Visualizes the Graph

W

warn(String, Throwable) - Static method in class org.molwind.util.MolwindLogger

warn(String) - Static method in class org.molwind.util.MolwindLogger

warn(Throwable) - Static method in class org.molwind.util.MolwindLogger

WorldEntity - Interface in org.molwind.model

WorldEntity interface represents entities of a Molwind world.

WorldLocator - Interface in org.molwind.io

WorldLocator implementations locate the data to build up molecular worlds.

writeTile(LayeredPosition, OutputStream) - Method in class org.molwind.view.Tiles

Writes the image of a tile for the given position to an output stream.

writeTo(OutputStream) - Method in interface org.molwind.model.Tile

Writes tile image data to the given output stream.

writeTo(OutputStream) - Method in class org.molwind.view.AbstractTile

Writes the tile's image to the given output stream.

writeTo(OutputStream) - Method in interface org.molwind.view.Tile

Writes the tile's image to the given OutputStream.

X

x - Variable in class org.molwind.model.PlacedWorldEntity

Y

y - Variable in class org.molwind.model.PlacedWorldEntity

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