The following document contains the results of Checkstyle. 
| Files | Infos  | Warnings  | Errors  | 
|---|---|---|---|
| 15 | 0 | 0 | 1447 | 
| Rules | Violations | Severity | 
|---|---|---|
| PackageHtml | 3 |  Error | 
| NewlineAtEndOfFile | 0 |  Error | 
| Translation | 0 |  Error | 
| JavadocMethod | 42 |  Error | 
| JavadocType | 1 |  Error | 
| JavadocVariable | 38 |  Error | 
| JavadocStyle | 13 |  Error | 
| ConstantName | 0 |  Error | 
| LocalFinalVariableName | 0 |  Error | 
| LocalVariableName | 0 |  Error | 
| MemberName | 0 |  Error | 
| MethodName | 0 |  Error | 
| PackageName | 0 |  Error | 
| ParameterName | 0 |  Error | 
| StaticVariableName | 0 |  Error | 
| TypeName | 0 |  Error | 
| AvoidStarImport | 4 |  Error | 
| IllegalImport | 0 |  Error | 
| RedundantImport | 14 |  Error | 
| UnusedImports | 70 |  Error | 
| FileLength | 0 |  Error | 
| LineLength | 40 |  Error | 
| MethodLength | 1 |  Error | 
| ParameterNumber | 0 |  Error | 
| EmptyForIteratorPad | 0 |  Error | 
| MethodParamPad | 0 |  Error | 
| NoWhitespaceAfter | 0 |  Error | 
| NoWhitespaceBefore | 2 |  Error | 
| OperatorWrap | 0 |  Error | 
| ParenPad | 12 |  Error | 
| TypecastParenPad | 0 |  Error | 
| TabCharacter | 435 |  Error | 
| WhitespaceAfter | 58 |  Error | 
| WhitespaceAround | 340 |  Error | 
| ModifierOrder | 0 |  Error | 
| RedundantModifier | 0 |  Error | 
| AvoidNestedBlocks | 0 |  Error | 
| EmptyBlock | 1 |  Error | 
| LeftCurly | 0 |  Error | 
| NeedBraces | 9 |  Error | 
| RightCurly | 0 |  Error | 
| AvoidInlineConditionals | 0 |  Error | 
| DoubleCheckedLocking | 0 |  Error | 
| EmptyStatement | 0 |  Error | 
| EqualsHashCode | 0 |  Error | 
| HiddenField | 6 |  Error | 
| IllegalInstantiation | 0 |  Error | 
| InnerAssignment | 0 |  Error | 
| MagicNumber | 34 |  Error | 
| MissingSwitchDefault | 0 |  Error | 
| RedundantThrows | 0 |  Error | 
| SimplifyBooleanExpression | 0 |  Error | 
| SimplifyBooleanReturn | 0 |  Error | 
| DesignForExtension | 55 |  Error | 
| FinalClass | 1 |  Error | 
| HideUtilityClassConstructor | 1 |  Error | 
| InterfaceIsType | 0 |  Error | 
| VisibilityModifier | 2 |  Error | 
| ArrayTypeStyle | 1 |  Error | 
| FinalParameters | 17 |  Error | 
| GenericIllegalRegexp 
 | 247 |  Error | 
| TodoComment | 0 |  Error | 
| UpperEll | 0 |  Error | 
| Violation | Message | Line | 
|---|---|---|
|  | Unused import - java.util.HashMap. | 3 | 
|  | Unused import - java.util.Map. | 4 | 
|  | Unused import - java.util.Iterator. | 5 | 
|  | Duplicate import to line 4 - java.util.Map. | 6 | 
|  | Unused import - java.util.Map. | 6 | 
|  | Unused import - java.util.Collection. | 7 | 
|  | Unused import - java.io.StringWriter. | 9 | 
|  | Unused import - java.io.FileReader. | 12 | 
|  | Unused import - java.awt.AlphaComposite. | 13 | 
|  | Unused import - java.awt.BorderLayout. | 14 | 
|  | Unused import - java.awt.Color. | 15 | 
|  | Unused import - java.awt.Container. | 16 | 
|  | Unused import - java.awt.Dimension. | 17 | 
|  | Unused import - java.awt.Font. | 18 | 
|  | Unused import - java.awt.Graphics. | 19 | 
|  | Unused import - java.awt.Graphics2D. | 20 | 
|  | Unused import - java.awt.RenderingHints. | 21 | 
|  | Unused import - java.awt.geom.AffineTransform. | 22 | 
|  | Unused import - java.awt.image.BufferedImage. | 23 | 
|  | Unused import - javax.imageio.ImageIO. | 24 | 
|  | Unused import - javax.swing.ImageIcon. | 25 | 
|  | Unused import - javax.swing.JFrame. | 26 | 
|  | Unused import - javax.swing.JPanel. | 27 | 
|  | Unused import - javax.swing.WindowConstants. | 28 | 
|  | Duplicate import to line 15 - java.awt.Color. | 29 | 
|  | Unused import - java.awt.Color. | 29 | 
|  | Unused import - java.awt.Paint. | 30 | 
|  | Unused import - org.openscience.cdk.io.MDLReader. | 32 | 
|  | Unused import - org.openscience.cdk.Molecule. | 34 | 
|  | Unused import - org.openscience.cdk.DefaultChemObjectBuilder. | 37 | 
|  | Unused import - org.openscience.cdk.exception.InvalidSmilesException. | 38 | 
|  | Unused import - org.openscience.cdk.geometry.GeometryToolsInternalCoordinates. | 39 | 
|  | Unused import - org.openscience.cdk.interfaces.IAtomContainer. | 40 | 
|  | Duplicate import to line 33 - org.openscience.cdk.interfaces.IMolecule. | 41 | 
|  | Unused import - org.openscience.cdk.layout.StructureDiagramGenerator. | 42 | 
|  | Unused import - org.openscience.cdk.renderer.Renderer2D. | 43 | 
|  | Unused import - org.openscience.cdk.renderer.Renderer2DModel. | 44 | 
|  | Unused import - org.openscience.cdk.smiles.SmilesParser. | 45 | 
|  | Duplicate import to line 8 - java.io.IOException. | 47 | 
|  | Unused import - org.molwind.model.PlacedWorldEntity. | 49 | 
|  | Line has trailing spaces. | 50 | 
|  | Unused import - edu.uci.ics.jung.graph.Graph. | 50 | 
|  | Unused import - edu.uci.ics.jung.visualization.BasicVisualizationServer. | 51 | 
|  | Duplicate import to line 17 - java.awt.Dimension. | 52 | 
|  | Unused import - java.awt.Dimension. | 52 | 
|  | Unused import - edu.uci.ics.jung.graph.SparseMultigraph. | 54 | 
|  | Unused import - edu.uci.ics.jung.io.GraphMLWriter. | 55 | 
|  | Using the '.*' form of import should be avoided - edu.uci.ics.jung.*. | 56 | 
|  | Unused import - edu.uci.ics.jung.graph.util.EdgeType. | 57 | 
|  | Unused import - edu.uci.ics.jung.graph.SparseGraph. | 59 | 
|  | Unused import - edu.uci.ics.jung.graph.DelegateTree. | 60 | 
|  | Unused import - edu.uci.ics.jung.graph.DelegateForest. | 61 | 
|  | Using the '.*' form of import should be avoided - edu.uci.ics.jung.algorithms.layout.*. | 63 | 
|  | Duplicate import to line 33 - org.openscience.cdk.interfaces.IMolecule. | 65 | 
|  | Duplicate import to line 41 - org.openscience.cdk.interfaces.IMolecule. | 65 | 
|  | Duplicate import to line 34 - org.openscience.cdk.Molecule. | 66 | 
|  | Unused import - org.openscience.cdk.Molecule. | 66 | 
|  | Unused import - edu.uci.ics.jung.algorithms.layout.StaticLayout. | 67 | 
|  | Using the '.*' form of import should be avoided - org.molwind.graph.*. | 69 | 
|  | Unused import - org.molwind.model.PartOf. | 70 | 
|  | Unused import - org.molwind.chemical.model.ChemicalWorld. | 74 | 
|  | Unused import - org.molwind.chemical.model.ChemicalEntity. | 75 | 
|  | Unused import - org.openscience.cdk.io.iterator.IteratingMDLReader. | 77 | 
|  | Duplicate import to line 37 - org.openscience.cdk.DefaultChemObjectBuilder. | 78 | 
|  | Unused import - org.openscience.cdk.DefaultChemObjectBuilder. | 78 | 
|  | Duplicate import to line 23 - java.awt.image.BufferedImage. | 80 | 
|  | Unused import - java.awt.image.BufferedImage. | 80 | 
|  | Duplicate import to line 37 - org.openscience.cdk.DefaultChemObjectBuilder. | 84 | 
|  | Duplicate import to line 78 - org.openscience.cdk.DefaultChemObjectBuilder. | 84 | 
|  | Unused import - org.openscience.cdk.DefaultChemObjectBuilder. | 84 | 
|  | Duplicate import to line 40 - org.openscience.cdk.interfaces.IAtomContainer. | 85 | 
|  | Unused import - org.openscience.cdk.interfaces.IAtomContainer. | 85 | 
|  | Duplicate import to line 45 - org.openscience.cdk.smiles.SmilesParser. | 86 | 
|  | Unused import - org.openscience.cdk.smiles.SmilesParser. | 86 | 
|  | Using the '.*' form of import should be avoided - javax.swing.*. | 88 | 
|  | Unused import - org.apache.commons.collections15.Transformer. | 90 | 
|  | Unused import - java.awt.geom.Point2D. | 91 | 
|  | Missing a Javadoc comment. | 94 | 
|  | Utility classes should not have a public or default constructor. | 94 | 
|  | '{' is not preceded with whitespace. | 94 | 
|  | Method length is 186 lines (max allowed is 150). | 97 | 
|  | Missing a Javadoc comment. | 97 | 
|  | Parameter args should be final. | 97 | 
|  | Array brackets at illegal position. | 97 | 
|  | '{' is not preceded with whitespace. | 97 | 
|  | Line has trailing spaces. | 99 | 
|  | Line has trailing spaces. | 101 | 
|  | Line has trailing spaces. | 103 | 
|  | Line has trailing spaces. | 105 | 
|  | Line has trailing spaces. | 108 | 
|  | Line contains a tab character. | 110 | 
|  | Line contains a tab character. | 111 | 
|  | Line contains a tab character. | 112 | 
|  | Line contains a tab character. | 114 | 
|  | Line contains a tab character. | 115 | 
|  | Line contains a tab character. | 116 | 
|  | Line has trailing spaces. | 117 | 
|  | Line contains a tab character. | 117 | 
|  | Line has trailing spaces. | 119 | 
|  | Line is longer than 80 characters. | 120 | 
|  | Line has trailing spaces. | 121 | 
|  | Line is longer than 80 characters. | 122 | 
|  | Line has trailing spaces. | 123 | 
|  | Line contains a tab character. | 125 | 
|  | Line has trailing spaces. | 126 | 
|  | Line contains a tab character. | 128 | 
|  | Line has trailing spaces. | 130 | 
|  | Line has trailing spaces. | 131 | 
|  | Line has trailing spaces. | 132 | 
|  | Line contains a tab character. | 132 | 
|  | Line is longer than 80 characters. | 133 | 
|  | Line contains a tab character. | 133 | 
|  | Line contains a tab character. | 134 | 
|  | Line contains a tab character. | 135 | 
|  | Line contains a tab character. | 136 | 
|  | Line contains a tab character. | 137 | 
|  | Line has trailing spaces. | 139 | 
|  | Line has trailing spaces. | 140 | 
|  | Line has trailing spaces. | 141 | 
|  | Line is longer than 80 characters. | 142 | 
|  | Line is longer than 80 characters. | 143 | 
|  | Line is longer than 80 characters. | 145 | 
|  | Line has trailing spaces. | 146 | 
|  | Line has trailing spaces. | 148 | 
|  | Line has trailing spaces. | 150 | 
|  | Line has trailing spaces. | 158 | 
|  | Line has trailing spaces. | 160 | 
|  | Line contains a tab character. | 160 | 
|  | Line contains a tab character. | 161 | 
|  | Line has trailing spaces. | 163 | 
|  | Line has trailing spaces. | 165 | 
|  | Line is longer than 80 characters. | 167 | 
|  | Line has trailing spaces. | 171 | 
|  | Line has trailing spaces. | 172 | 
|  | Line has trailing spaces. | 175 | 
|  | Line contains a tab character. | 177 | 
|  | Line contains a tab character. | 178 | 
|  | Line has trailing spaces. | 179 | 
|  | Line has trailing spaces. | 180 | 
|  | Line is longer than 80 characters. | 181 | 
|  | Line contains a tab character. | 183 | 
|  | Line has trailing spaces. | 184 | 
|  | Line contains a tab character. | 184 | 
|  | Line contains a tab character. | 186 | 
|  | Line has trailing spaces. | 187 | 
|  | Line is longer than 80 characters. | 188 | 
|  | Line contains a tab character. | 189 | 
|  | Line contains a tab character. | 190 | 
|  | Line contains a tab character. | 191 | 
|  | Line has trailing spaces. | 192 | 
|  | Line contains a tab character. | 192 | 
|  | Line has trailing spaces. | 194 | 
|  | Line is longer than 80 characters. | 197 | 
|  | Line has trailing spaces. | 203 | 
|  | Line has trailing spaces. | 204 | 
|  | Line has trailing spaces. | 205 | 
|  | Line is longer than 80 characters. | 207 | 
|  | Line has trailing spaces. | 209 | 
|  | Line has trailing spaces. | 210 | 
|  | Line contains a tab character. | 210 | 
|  | Line has trailing spaces. | 211 | 
|  | Line contains a tab character. | 211 | 
|  | Line has trailing spaces. | 213 | 
|  | Line contains a tab character. | 213 | 
|  | Line has trailing spaces. | 215 | 
|  | Line contains a tab character. | 215 | 
|  | '<' is not preceded with whitespace. | 217 | 
|  | '<' is not followed by whitespace. | 217 | 
|  | '>' is not preceded with whitespace. | 217 | 
|  | '<' is not preceded with whitespace. | 217 | 
|  | '<' is not followed by whitespace. | 217 | 
|  | '>' is not preceded with whitespace. | 217 | 
|  | '>' is not followed by whitespace. | 217 | 
|  | Line is longer than 80 characters. | 218 | 
|  | '=' is not followed by whitespace. | 218 | 
|  | '+' is not preceded with whitespace. | 218 | 
|  | '+' is not followed by whitespace. | 218 | 
|  | 'for' is not followed by whitespace. | 222 | 
|  | ':' is not preceded with whitespace. | 222 | 
|  | ':' is not followed by whitespace. | 222 | 
|  | '{' is not preceded with whitespace. | 222 | 
|  | Line contains a tab character. | 223 | 
|  | '=' is not preceded with whitespace. | 223 | 
|  | '=' is not followed by whitespace. | 223 | 
|  | Line contains a tab character. | 224 | 
|  | Line has trailing spaces. | 226 | 
|  | Line has trailing spaces. | 227 | 
|  | 'try' is not followed by whitespace. | 228 | 
|  | '{' is not preceded with whitespace. | 228 | 
|  | Line has trailing spaces. | 229 | 
|  | Line contains a tab character. | 229 | 
|  | Line contains a tab character. | 230 | 
|  | ',' is not followed by whitespace. | 230 | 
|  | Line contains a tab character. | 231 | 
|  | '=' is not preceded with whitespace. | 231 | 
|  | ',' is not followed by whitespace. | 231 | 
|  | Line has trailing spaces. | 232 | 
|  | Line contains a tab character. | 232 | 
|  | Line has trailing spaces. | 233 | 
|  | Line contains a tab character. | 233 | 
|  | Line contains a tab character. | 234 | 
|  | Line has trailing spaces. | 235 | 
|  | Line contains a tab character. | 235 | 
|  | Line contains a tab character. | 236 | 
|  | Line contains a tab character. | 237 | 
|  | Line contains a tab character. | 238 | 
|  | Line is longer than 80 characters. | 239 | 
|  | Line contains a tab character. | 239 | 
|  | Line contains a tab character. | 240 | 
|  | Line contains a tab character. | 241 | 
|  | Line contains a tab character. | 242 | 
|  | Line contains a tab character. | 244 | 
|  | Line has trailing spaces. | 245 | 
|  | Line contains a tab character. | 245 | 
|  | Line contains a tab character. | 246 | 
|  | Line contains a tab character. | 247 | 
|  | Line contains a tab character. | 248 | 
|  | Line contains a tab character. | 249 | 
|  | Line contains a tab character. | 250 | 
|  | Line contains a tab character. | 251 | 
|  | Line contains a tab character. | 252 | 
|  | Line has trailing spaces. | 253 | 
|  | Line contains a tab character. | 253 | 
|  | Line contains a tab character. | 254 | 
|  | Line contains a tab character. | 255 | 
|  | Line contains a tab character. | 258 | 
|  | Line contains a tab character. | 260 | 
|  | Line contains a tab character. | 261 | 
|  | Line contains a tab character. | 262 | 
|  | Line contains a tab character. | 263 | 
|  | Line contains a tab character. | 265 | 
|  | Line has trailing spaces. | 266 | 
|  | Line contains a tab character. | 266 | 
|  | Line has trailing spaces. | 267 | 
|  | Line contains a tab character. | 267 | 
|  | Line has trailing spaces. | 268 | 
|  | Line contains a tab character. | 268 | 
|  | Line contains a tab character. | 269 | 
|  | Line has trailing spaces. | 271 | 
|  | Line contains a tab character. | 271 | 
|  | Line has trailing spaces. | 272 | 
|  | Line contains a tab character. | 272 | 
|  | Line has trailing spaces. | 273 | 
|  | Line contains a tab character. | 273 | 
|  | 'catch' is not preceded with whitespace. | 274 | 
|  | '}' is not followed by whitespace. | 274 | 
|  | '{' is not preceded with whitespace. | 274 | 
|  | Line contains a tab character. | 275 | 
|  | Line has trailing spaces. | 277 | 
|  | Line contains a tab character. | 277 | 
|  | Line has trailing spaces. | 278 | 
|  | Line has trailing spaces. | 280 | 
|  | Line contains a tab character. | 280 | 
|  | Line has trailing spaces. | 281 | 
|  | Line contains a tab character. | 281 | 
|  | Line has trailing spaces. | 283 | 
| Violation | Message | Line | 
|---|---|---|
|  | Unused import - java.util.Arrays. | 24 | 
|  | Missing a Javadoc comment. | 48 | 
|  | '<' is not preceded with whitespace. | 48 | 
|  | '<' is not followed by whitespace. | 48 | 
|  | '>' is not preceded with whitespace. | 48 | 
|  | Missing a Javadoc comment. | 49 | 
|  | Missing a Javadoc comment. | 50 | 
|  | Missing a Javadoc comment. | 51 | 
|  | '=' is not preceded with whitespace. | 51 | 
|  | '=' is not followed by whitespace. | 51 | 
|  | Missing a Javadoc comment. | 52 | 
|  | Missing a Javadoc comment. | 53 | 
|  | Missing a Javadoc comment. | 54 | 
|  | Missing a Javadoc comment. | 55 | 
|  | Missing a Javadoc comment. | 56 | 
|  | Line has trailing spaces. | 57 | 
|  | '<' is not preceded with whitespace. | 70 | 
|  | '<' is not followed by whitespace. | 70 | 
|  | '>' is not preceded with whitespace. | 70 | 
|  | '>' is not followed by whitespace. | 70 | 
|  | Line contains a tab character. | 71 | 
|  | 'for' is not followed by whitespace. | 71 | 
|  | ':' is not preceded with whitespace. | 71 | 
|  | ':' is not followed by whitespace. | 71 | 
|  | '{' is not preceded with whitespace. | 71 | 
|  | Line contains a tab character. | 72 | 
|  | Line contains a tab character. | 73 | 
|  | Line contains a tab character. | 75 | 
|  | Line contains a tab character. | 79 | 
|  | Line has trailing spaces. | 84 | 
|  | Line has trailing spaces. | 86 | 
|  | Missing a Javadoc comment. | 87 | 
|  | Line contains a tab character. | 88 | 
|  | Line has trailing spaces. | 89 | 
|  | Line contains a tab character. | 89 | 
|  | Line has trailing spaces. | 90 | 
|  | Line contains a tab character. | 90 | 
|  | Line has trailing spaces. | 92 | 
|  | Line contains a tab character. | 92 | 
|  | Line has trailing spaces. | 93 | 
|  | Line contains a tab character. | 93 | 
|  | Line contains a tab character. | 100 | 
|  | Line contains a tab character. | 101 | 
|  | Line has trailing spaces. | 104 | 
|  | Line contains a tab character. | 104 | 
|  | Line has trailing spaces. | 107 | 
|  | Line contains a tab character. | 107 | 
|  | Line is longer than 80 characters. | 111 | 
|  | Line contains a tab character. | 111 | 
|  | Line has trailing spaces. | 112 | 
|  | Line contains a tab character. | 112 | 
|  | Line has trailing spaces. | 114 | 
|  | Line contains a tab character. | 114 | 
|  | Line has trailing spaces. | 120 | 
|  | Line contains a tab character. | 120 | 
|  | Line contains a tab character. | 121 | 
|  | Line contains a tab character. | 122 | 
|  | '=' is not followed by whitespace. | 122 | 
|  | Line has trailing spaces. | 123 | 
|  | Line contains a tab character. | 123 | 
|  | Line contains a tab character. | 124 | 
|  | Line contains a tab character. | 125 | 
|  | ',' is not followed by whitespace. | 125 | 
|  | Line contains a tab character. | 126 | 
|  | Line contains a tab character. | 127 | 
|  | Line contains a tab character. | 128 | 
|  | Line contains a tab character. | 129 | 
|  | Line has trailing spaces. | 130 | 
|  | Line contains a tab character. | 130 | 
|  | Line has trailing spaces. | 133 | 
|  | Line has trailing spaces. | 135 | 
|  | Line has trailing spaces. | 136 | 
|  | First sentence should end with a period. | 137 | 
|  | Line has trailing spaces. | 139 | 
|  | Line has trailing spaces. | 140 | 
|  | Line has trailing spaces. | 143 | 
|  | Method 'setFileReader' is not designed for extension - needs to be abstract, final or empty. | 143 | 
|  | Parameter f should be final. | 143 | 
|  | Expected @param tag for 'f'. | 143 | 
|  | Line contains a tab character. | 144 | 
|  | Expected @throws tag for 'IOException'. | 144 | 
|  | '{' is not preceded with whitespace. | 144 | 
|  | Line contains a tab character. | 145 | 
|  | Line is longer than 80 characters. | 146 | 
|  | Line contains a tab character. | 146 | 
|  | ',' is not followed by whitespace. | 146 | 
|  | First sentence should end with a period. | 150 | 
|  | Line has trailing spaces. | 152 | 
|  | Line has trailing spaces. | 153 | 
|  | Method 'setFileReader' is not designed for extension - needs to be abstract, final or empty. | 156 | 
|  | Parameter name should be final. | 156 | 
|  | Expected @param tag for 'name'. | 156 | 
|  | '{' is not preceded with whitespace. | 156 | 
|  | Line contains a tab character. | 157 | 
|  | '=' is not preceded with whitespace. | 157 | 
|  | '=' is not followed by whitespace. | 157 | 
|  | Line contains a tab character. | 158 | 
|  | 'for' is not followed by whitespace. | 158 | 
|  | ':' is not preceded with whitespace. | 158 | 
|  | ':' is not followed by whitespace. | 158 | 
|  | '{' is not preceded with whitespace. | 158 | 
|  | Line has trailing spaces. | 159 | 
|  | Line contains a tab character. | 159 | 
|  | Line contains a tab character. | 160 | 
|  | 'if' is not followed by whitespace. | 160 | 
|  | '{' is not preceded with whitespace. | 160 | 
|  | Line has trailing spaces. | 161 | 
|  | Line contains a tab character. | 161 | 
|  | Line contains a tab character. | 162 | 
|  | '=' is not preceded with whitespace. | 162 | 
|  | '=' is not followed by whitespace. | 162 | 
|  | Line contains a tab character. | 163 | 
|  | Line contains a tab character. | 164 | 
|  | Line contains a tab character. | 165 | 
|  | Line contains a tab character. | 166 | 
|  | 'try' is not followed by whitespace. | 166 | 
|  | '{' is not preceded with whitespace. | 166 | 
|  | Line contains a tab character. | 167 | 
|  | Line is longer than 80 characters. | 168 | 
|  | Line contains a tab character. | 168 | 
|  | ',' is not followed by whitespace. | 168 | 
|  | Line contains a tab character. | 169 | 
|  | 'catch' is not preceded with whitespace. | 169 | 
|  | '}' is not followed by whitespace. | 169 | 
|  | 'catch' is not followed by whitespace. | 169 | 
|  | '{' is not preceded with whitespace. | 169 | 
|  | Line contains a tab character. | 170 | 
|  | Line contains a tab character. | 171 | 
|  | Line has trailing spaces. | 174 | 
|  | First sentence should end with a period. | 175 | 
|  | Line has trailing spaces. | 178 | 
|  | Method 'getDefaultEntityGraph' is not designed for extension - needs to be abstract, final or empty. | 182 | 
|  | Line contains a tab character. | 183 | 
|  | Expected @throws tag for 'IOException'. | 183 | 
|  | '{' is not preceded with whitespace. | 183 | 
|  | Line contains a tab character. | 184 | 
|  | Line contains a tab character. | 185 | 
|  | Line contains a tab character. | 186 | 
|  | Missing a Javadoc comment. | 189 | 
|  | Line has trailing spaces. | 194 | 
|  | Line contains a tab character. | 194 | 
|  | 'currentEntity' hides a field. | 195 | 
|  | 'lastEntity' hides a field. | 196 | 
|  | Line contains a tab character. | 197 | 
|  | Line has trailing spaces. | 199 | 
|  | Line contains a tab character. | 199 | 
|  | Line has trailing spaces. | 205 | 
|  | Line contains a tab character. | 205 | 
|  | Line has trailing spaces. | 207 | 
|  | Line contains a tab character. | 207 | 
|  | Line has trailing spaces. | 209 | 
|  | Line contains a tab character. | 209 | 
|  | Line has trailing spaces. | 210 | 
|  | Line contains a tab character. | 210 | 
|  | Line has trailing spaces. | 217 | 
|  | Line contains a tab character. | 217 | 
|  | Method 'hasNext' is not designed for extension - needs to be abstract, final or empty. | 228 | 
|  | Line has trailing spaces. | 240 | 
|  | Line has trailing spaces. | 241 | 
|  | Line has trailing spaces. | 242 | 
|  | Line contains a tab character. | 242 | 
|  | Line has trailing spaces. | 243 | 
|  | Line contains a tab character. | 243 | 
|  | Line has trailing spaces. | 244 | 
|  | Method 'next' is not designed for extension - needs to be abstract, final or empty. | 252 | 
|  | Method 'remove' is not designed for extension - needs to be abstract, final or empty. | 264 | 
| Violation | Message | Line | 
|---|---|---|
|  | Line is longer than 80 characters. | 43 | 
|  | Missing a Javadoc comment. | 45 | 
|  | Missing a Javadoc comment. | 46 | 
|  | Missing a Javadoc comment. | 47 | 
|  | Missing a Javadoc comment. | 48 | 
|  | '<' is not preceded with whitespace. | 48 | 
|  | '<' is not followed by whitespace. | 48 | 
|  | '>' is not preceded with whitespace. | 48 | 
|  | First sentence should end with a period. | 50 | 
|  | Variable 'pathNames' must be private and have accessor methods. | 54 | 
|  | First sentence should end with a period. | 72 | 
|  | Line has trailing spaces. | 76 | 
|  | '(' is followed by whitespace. | 82 | 
|  | Line contains a tab character. | 85 | 
|  | '<' is not preceded with whitespace. | 85 | 
|  | '<' is not followed by whitespace. | 85 | 
|  | '>' is not preceded with whitespace. | 85 | 
|  | '>' is not followed by whitespace. | 85 | 
|  | First sentence should end with a period. | 88 | 
|  | Line has trailing spaces. | 89 | 
|  | Method 'addBasePath' is not designed for extension - needs to be abstract, final or empty. | 94 | 
|  | '{' is not preceded with whitespace. | 94 | 
|  | Line contains a tab character. | 95 | 
|  | First sentence should end with a period. | 98 | 
|  | Method 'removeBasePath' is not designed for extension - needs to be abstract, final or empty. | 104 | 
|  | '{' is not preceded with whitespace. | 104 | 
|  | Line contains a tab character. | 106 | 
|  | First sentence should end with a period. | 109 | 
|  | Line has trailing spaces. | 112 | 
|  | Line has trailing spaces. | 114 | 
|  | Method 'locateByFileName' is not designed for extension - needs to be abstract, final or empty. | 119 | 
|  | Parameter fileName should be final. | 119 | 
|  | Expected @param tag for 'fileName'. | 119 | 
|  | '{' is not preceded with whitespace. | 120 | 
|  | Line contains a tab character. | 121 | 
|  | Line contains a tab character. | 122 | 
|  | Line contains a tab character. | 123 | 
|  | 'for' is not followed by whitespace. | 123 | 
|  | ':' is not preceded with whitespace. | 123 | 
|  | ':' is not followed by whitespace. | 123 | 
|  | '{' is not preceded with whitespace. | 123 | 
|  | Line contains a tab character. | 124 | 
|  | 'if' is not followed by whitespace. | 124 | 
|  | '{' is not preceded with whitespace. | 124 | 
|  | Line is longer than 80 characters. | 125 | 
|  | Line contains a tab character. | 125 | 
|  | ',' is not followed by whitespace. | 125 | 
|  | Line is longer than 80 characters. | 126 | 
|  | Line contains a tab character. | 126 | 
|  | ',' is not followed by whitespace. | 126 | 
|  | Line contains a tab character. | 127 | 
|  | 'cast' is not followed by whitespace. | 127 | 
|  | Line has trailing spaces. | 128 | 
|  | Line contains a tab character. | 128 | 
|  | Line contains a tab character. | 129 | 
|  | Line has trailing spaces. | 130 | 
|  | Line contains a tab character. | 130 | 
|  | Line contains a tab character. | 131 | 
|  | Line has trailing spaces. | 132 | 
|  | Line contains a tab character. | 132 | 
|  | Line contains a tab character. | 133 | 
|  | Line has trailing spaces. | 134 | 
|  | Line contains a tab character. | 134 | 
|  | Line has trailing spaces. | 136 | 
|  | Line has trailing spaces. | 137 | 
|  | Missing a Javadoc comment. | 138 | 
|  | Parameter path should be final. | 138 | 
|  | '{' is not preceded with whitespace. | 138 | 
|  | Line contains a tab character. | 139 | 
|  | 'if' construct must use '{}'s. | 140 | 
|  | Line contains a tab character. | 140 | 
|  | 'if' is not followed by whitespace. | 140 | 
|  | Line contains a tab character. | 141 | 
|  | Line contains a tab character. | 142 | 
|  | Line contains a tab character. | 143 | 
|  | 'while' is not followed by whitespace. | 143 | 
|  | '{' is not preceded with whitespace. | 143 | 
|  | Line contains a tab character. | 144 | 
|  | 'cast' is not followed by whitespace. | 144 | 
|  | Line has trailing spaces. | 145 | 
|  | Line contains a tab character. | 145 | 
|  | Line contains a tab character. | 146 | 
|  | Line is longer than 80 characters. | 147 | 
|  | Line contains a tab character. | 147 | 
|  | 'cast' is not followed by whitespace. | 147 | 
|  | Line has trailing spaces. | 148 | 
|  | Line contains a tab character. | 148 | 
|  | 'if' construct must use '{}'s. | 149 | 
|  | Line contains a tab character. | 149 | 
|  | 'if' is not followed by whitespace. | 149 | 
|  | Line contains a tab character. | 150 | 
|  | Line has trailing spaces. | 151 | 
|  | Line contains a tab character. | 151 | 
|  | Line contains a tab character. | 152 | 
|  | Line has trailing spaces. | 153 | 
|  | Line contains a tab character. | 153 | 
|  | Line contains a tab character. | 154 | 
|  | Line has trailing spaces. | 155 | 
|  | Line contains a tab character. | 155 | 
|  | Method 'locateWorld' is not designed for extension - needs to be abstract, final or empty. | 168 | 
|  | Line has trailing spaces. | 172 | 
|  | Line contains a tab character. | 172 | 
|  | Missing a Javadoc comment. | 218 | 
|  | Parameter suffixes should be final. | 218 | 
|  | 'suffixes' hides a field. | 218 | 
|  | '{' is not preceded with whitespace. | 218 | 
|  | Line contains a tab character. | 219 | 
|  | '<' is not preceded with whitespace. | 219 | 
|  | '<' is not followed by whitespace. | 219 | 
|  | '>' is not preceded with whitespace. | 219 | 
|  | '<' is not preceded with whitespace. | 219 | 
|  | '<' is not followed by whitespace. | 219 | 
|  | '>' is not preceded with whitespace. | 219 | 
|  | '>' is not followed by whitespace. | 219 | 
|  | Line contains a tab character. | 220 | 
|  | 'for' is not followed by whitespace. | 220 | 
|  | ':' is not preceded with whitespace. | 220 | 
|  | ':' is not followed by whitespace. | 220 | 
|  | '{' is not preceded with whitespace. | 220 | 
|  | Line contains a tab character. | 221 | 
|  | Line contains a tab character. | 222 | 
|  | 'if' is not followed by whitespace. | 222 | 
|  | '{' is not preceded with whitespace. | 222 | 
|  | Line contains a tab character. | 223 | 
|  | Line has trailing spaces. | 224 | 
|  | Line contains a tab character. | 224 | 
|  | Line contains a tab character. | 225 | 
|  | 'else' is not preceded with whitespace. | 225 | 
|  | '}' is not followed by whitespace. | 225 | 
|  | 'else' is not followed by whitespace. | 225 | 
|  | '{' is not preceded with whitespace. | 225 | 
|  | Line contains a tab character. | 226 | 
|  | 'for' is not followed by whitespace. | 226 | 
|  | ':' is not preceded with whitespace. | 226 | 
|  | ':' is not followed by whitespace. | 226 | 
|  | '{' is not preceded with whitespace. | 226 | 
|  | Line has trailing spaces. | 227 | 
|  | Line contains a tab character. | 227 | 
|  | Line contains a tab character. | 228 | 
|  | '=' is not preceded with whitespace. | 228 | 
|  | '=' is not followed by whitespace. | 228 | 
|  | '+' is not preceded with whitespace. | 228 | 
|  | '+' is not followed by whitespace. | 228 | 
|  | Line contains a tab character. | 229 | 
|  | Line contains a tab character. | 230 | 
|  | Line contains a tab character. | 232 | 
|  | Line has trailing spaces. | 233 | 
|  | Line contains a tab character. | 233 | 
|  | Line contains a tab character. | 234 | 
|  | Line contains a tab character. | 238 | 
|  | Line contains a tab character. | 239 | 
|  | 'cast' is not followed by whitespace. | 239 | 
|  | '(' is followed by whitespace. | 239 | 
|  | ')' is preceded with whitespace. | 239 | 
|  | Line has trailing spaces. | 240 | 
|  | Line contains a tab character. | 240 | 
|  | Line has trailing spaces. | 246 | 
|  | Line contains a tab character. | 248 | 
|  | Line contains a tab character. | 249 | 
|  | Line contains a tab character. | 250 | 
|  | Line has trailing spaces. | 251 | 
|  | Line contains a tab character. | 251 | 
|  | Line has trailing spaces. | 260 | 
|  | Method 'getWorldNames' is not designed for extension - needs to be abstract, final or empty. | 265 | 
|  | '{' is not preceded with whitespace. | 265 | 
|  | Line is longer than 80 characters. | 266 | 
|  | Line contains a tab character. | 266 | 
|  | Line contains a tab character. | 267 | 
|  | Line contains a tab character. | 269 | 
|  | '<' is not preceded with whitespace. | 269 | 
|  | '<' is not followed by whitespace. | 269 | 
|  | '>' is not preceded with whitespace. | 269 | 
|  | '<' is not preceded with whitespace. | 269 | 
|  | '<' is not followed by whitespace. | 269 | 
|  | '>' is not preceded with whitespace. | 269 | 
|  | '>' is not followed by whitespace. | 269 | 
|  | Line contains a tab character. | 271 | 
|  | 'for' is not followed by whitespace. | 271 | 
|  | ':' is not preceded with whitespace. | 271 | 
|  | ':' is not followed by whitespace. | 271 | 
|  | '{' is not preceded with whitespace. | 271 | 
|  | Line contains a tab character. | 272 | 
|  | Line contains a tab character. | 273 | 
|  | 'if' is not followed by whitespace. | 273 | 
|  | '{' is not preceded with whitespace. | 273 | 
|  | Line has trailing spaces. | 274 | 
|  | Line contains a tab character. | 274 | 
|  | Line contains a tab character. | 275 | 
|  | Line has trailing spaces. | 276 | 
|  | Line contains a tab character. | 276 | 
|  | Line contains a tab character. | 277 | 
|  | 'else' is not preceded with whitespace. | 277 | 
|  | '}' is not followed by whitespace. | 277 | 
|  | 'if' is not followed by whitespace. | 277 | 
|  | '{' is not preceded with whitespace. | 277 | 
|  | Line contains a tab character. | 278 | 
|  | 'try' is not followed by whitespace. | 278 | 
|  | '{' is not preceded with whitespace. | 278 | 
|  | Line contains a tab character. | 279 | 
|  | Line has trailing spaces. | 280 | 
|  | Line contains a tab character. | 280 | 
|  | Line contains a tab character. | 281 | 
|  | ',' is not followed by whitespace. | 281 | 
|  | Line contains a tab character. | 282 | 
|  | 'catch' is not preceded with whitespace. | 282 | 
|  | '}' is not followed by whitespace. | 282 | 
|  | 'catch' is not followed by whitespace. | 282 | 
|  | '{' is not preceded with whitespace. | 282 | 
|  | Line contains a tab character. | 283 | 
|  | Line contains a tab character. | 284 | 
|  | Line contains a tab character. | 286 | 
|  | Line contains a tab character. | 287 | 
|  | Line contains a tab character. | 288 | 
|  | Line contains a tab character. | 289 | 
|  | Line contains a tab character. | 290 | 
|  | Line contains a tab character. | 291 | 
|  | Line has trailing spaces. | 292 | 
|  | Line contains a tab character. | 292 | 
|  | Line contains a tab character. | 293 | 
|  | Line contains a tab character. | 294 | 
|  | Line contains a tab character. | 295 | 
|  | Line has trailing spaces. | 296 | 
|  | Line contains a tab character. | 296 | 
|  | Line has trailing spaces. | 297 | 
|  | Line has trailing spaces. | 298 | 
|  | Line contains a tab character. | 298 | 
|  | Line contains a tab character. | 299 | 
|  | Line has trailing spaces. | 300 | 
|  | Line contains a tab character. | 300 | 
|  | Line contains a tab character. | 302 | 
|  | Line has trailing spaces. | 303 | 
|  | Line contains a tab character. | 303 | 
|  | 'cast' is not followed by whitespace. | 305 | 
|  | ';' is preceded with whitespace. | 305 | 
|  | Line has trailing spaces. | 308 | 
|  | Line has trailing spaces. | 309 | 
|  | Line is longer than 80 characters. | 314 | 
|  | Missing a Javadoc comment. | 314 | 
|  | Parameter dPath should be final. | 314 | 
|  | ',' is not followed by whitespace. | 314 | 
|  | Parameter result should be final. | 314 | 
|  | '<' is not preceded with whitespace. | 314 | 
|  | '<' is not followed by whitespace. | 314 | 
|  | '>' is not preceded with whitespace. | 314 | 
|  | Line has trailing spaces. | 316 | 
|  | Line contains a tab character. | 316 | 
|  | Line contains a tab character. | 317 | 
|  | Line has trailing spaces. | 318 | 
|  | Line has trailing spaces. | 319 | 
|  | Line contains a tab character. | 319 | 
|  | Line has trailing spaces. | 320 | 
|  | Line contains a tab character. | 320 | 
|  | Line contains a tab character. | 321 | 
|  | Line contains a tab character. | 323 | 
|  | 'for' is not followed by whitespace. | 323 | 
|  | ':' is not preceded with whitespace. | 323 | 
|  | ':' is not followed by whitespace. | 323 | 
|  | '{' is not preceded with whitespace. | 323 | 
|  | Line has trailing spaces. | 324 | 
|  | Line contains a tab character. | 324 | 
|  | 'if' is not followed by whitespace. | 324 | 
|  | '{' is not preceded with whitespace. | 324 | 
|  | Line has trailing spaces. | 325 | 
|  | Line contains a tab character. | 325 | 
|  | Line has trailing spaces. | 328 | 
|  | Line contains a tab character. | 328 | 
|  | Line contains a tab character. | 329 | 
|  | '+' is not preceded with whitespace. | 329 | 
|  | '+' is not followed by whitespace. | 329 | 
|  | '+' is not preceded with whitespace. | 329 | 
|  | '+' is not followed by whitespace. | 329 | 
|  | Line has trailing spaces. | 330 | 
|  | Line contains a tab character. | 330 | 
|  | Line contains a tab character. | 331 | 
|  | 'else' is not preceded with whitespace. | 331 | 
|  | '}' is not followed by whitespace. | 331 | 
|  | 'if' is not followed by whitespace. | 331 | 
|  | '{' is not preceded with whitespace. | 331 | 
|  | Line has trailing spaces. | 332 | 
|  | Line contains a tab character. | 332 | 
|  | Line contains a tab character. | 333 | 
|  | '+' is not preceded with whitespace. | 333 | 
|  | '+' is not followed by whitespace. | 333 | 
|  | '+' is not preceded with whitespace. | 333 | 
|  | '+' is not followed by whitespace. | 333 | 
|  | Line contains a tab character. | 334 | 
|  | '+' is not preceded with whitespace. | 334 | 
|  | '+' is not followed by whitespace. | 334 | 
|  | '+' is not preceded with whitespace. | 334 | 
|  | '+' is not followed by whitespace. | 334 | 
|  | ',' is not followed by whitespace. | 334 | 
|  | Line has trailing spaces. | 335 | 
|  | Line contains a tab character. | 335 | 
|  | Line contains a tab character. | 336 | 
|  | Line has trailing spaces. | 337 | 
|  | Line contains a tab character. | 337 | 
|  | Line contains a tab character. | 339 | 
|  | Line has trailing spaces. | 340 | 
|  | Line contains a tab character. | 340 | 
|  | Line has trailing spaces. | 341 | 
|  | Line has trailing spaces. | 342 | 
|  | Line contains a tab character. | 342 | 
|  | Missing a Javadoc comment. | 346 | 
|  | Line has trailing spaces. | 347 | 
|  | Line has trailing spaces. | 350 | 
|  | Line has trailing spaces. | 354 | 
|  | Method 'getParentAttributeName' is not designed for extension - needs to be abstract, final or empty. | 363 | 
|  | Method 'setParentAttributeName' is not designed for extension - needs to be abstract, final or empty. | 373 | 
|  | Method 'getIdAttributeName' is not designed for extension - needs to be abstract, final or empty. | 383 | 
|  | Method 'setIdAttributeName' is not designed for extension - needs to be abstract, final or empty. | 393 | 
|  | First sentence should end with a period. | 396 | 
|  | Line has trailing spaces. | 397 | 
|  | Method 'setPathNames' is not designed for extension - needs to be abstract, final or empty. | 402 | 
|  | First sentence should end with a period. | 405 | 
|  | Line has trailing spaces. | 408 | 
|  | Method 'getPathNames' is not designed for extension - needs to be abstract, final or empty. | 412 | 
|  | '{' is not preceded with whitespace. | 412 | 
|  | Line contains a tab character. | 413 | 
|  | Line has trailing spaces. | 418 | 
| Violation | Message | Line | 
|---|---|---|
|  | Missing package documentation file. | 0 | 
| Violation | Message | Line | 
|---|---|---|
|  | Unused import - java.awt.geom.Point2D. | 25 | 
|  | Missing a Javadoc comment. | 49 | 
|  | Missing a Javadoc comment. | 50 | 
|  | Missing a Javadoc comment. | 51 | 
|  | Missing a Javadoc comment. | 52 | 
|  | Missing a Javadoc comment. | 53 | 
|  | '=' is not preceded with whitespace. | 53 | 
|  | '=' is not followed by whitespace. | 53 | 
|  | Missing a Javadoc comment. | 54 | 
|  | '=' is not preceded with whitespace. | 54 | 
|  | '=' is not followed by whitespace. | 54 | 
|  | Line has trailing spaces. | 55 | 
|  | Missing a Javadoc comment. | 56 | 
|  | Missing a Javadoc comment. | 57 | 
|  | Line has trailing spaces. | 58 | 
|  | Line has trailing spaces. | 61 | 
|  | Line has trailing spaces. | 62 | 
|  | Method 'getIdentity' is not designed for extension - needs to be abstract, final or empty. | 91 | 
|  | Method 'setIdentity' is not designed for extension - needs to be abstract, final or empty. | 101 | 
|  | Method 'addRelationship' is not designed for extension - needs to be abstract, final or empty. | 110 | 
|  | Method 'hasRelationship' is not designed for extension - needs to be abstract, final or empty. | 125 | 
|  | 'relations' hides a field. | 148 | 
|  | Method 'getMoleculeRenderer' is not designed for extension - needs to be abstract, final or empty. | 158 | 
|  | Method 'setMoleculeRenderer' is not designed for extension - needs to be abstract, final or empty. | 168 | 
|  | Method 'getDrawing' is not designed for extension - needs to be abstract, final or empty. | 179 | 
|  | 'moleculeRenderer' hides a field. | 180 | 
|  | Missing a Javadoc comment. | 190 | 
|  | Missing a Javadoc comment. | 199 | 
|  | Method 'equals' is not designed for extension - needs to be abstract, final or empty. | 216 | 
|  | Method 'hashCode' is not designed for extension - needs to be abstract, final or empty. | 257 | 
|  | '36697' is a magic number. | 259 | 
|  | Line has trailing spaces. | 261 | 
|  | First sentence should end with a period. | 262 | 
|  | Line has trailing spaces. | 264 | 
|  | Method 'getMolecule' is not designed for extension - needs to be abstract, final or empty. | 270 | 
|  | Line has trailing spaces. | 276 | 
|  | First sentence should end with a period. | 277 | 
|  | Line has trailing spaces. | 278 | 
|  | Line has trailing spaces. | 284 | 
|  | Method 'setMolecule' is not designed for extension - needs to be abstract, final or empty. | 285 | 
|  | Parameter mol should be final. | 285 | 
|  | Expected @param tag for 'mol'. | 285 | 
|  | '{' is not preceded with whitespace. | 285 | 
|  | Line contains a tab character. | 286 | 
|  | '=' is not preceded with whitespace. | 286 | 
|  | '=' is not followed by whitespace. | 286 | 
|  | Line has trailing spaces. | 287 | 
|  | Line contains a tab character. | 287 | 
|  | Line has trailing spaces. | 289 | 
|  | Line has trailing spaces. | 290 | 
|  | Method 'getAttribute' is not designed for extension - needs to be abstract, final or empty. | 300 | 
|  | Line contains a tab character. | 302 | 
|  | Line contains a tab character. | 304 | 
|  | ')' is preceded with whitespace. | 304 | 
|  | Line has trailing spaces. | 306 | 
|  | First sentence should end with a period. | 307 | 
|  | Line has trailing spaces. | 310 | 
|  | Method 'getDimension' is not designed for extension - needs to be abstract, final or empty. | 313 | 
|  | '{' is not preceded with whitespace. | 313 | 
|  | Line contains a tab character. | 314 | 
|  | Line has trailing spaces. | 315 | 
|  | Method 'setAttribute' is not designed for extension - needs to be abstract, final or empty. | 326 | 
|  | Line contains a tab character. | 327 | 
|  | '(' is followed by whitespace. | 327 | 
|  | ')' is preceded with whitespace. | 327 | 
|  | Line contains a tab character. | 328 | 
|  | ',' is not followed by whitespace. | 328 | 
|  | Line has trailing spaces. | 330 | 
|  | Line has trailing spaces. | 331 | 
|  | Line has trailing spaces. | 332 | 
|  | Line has trailing spaces. | 333 | 
|  | Line has trailing spaces. | 334 | 
|  | Missing a Javadoc comment. | 335 | 
|  | '<' is not preceded with whitespace. | 335 | 
|  | '<' is not followed by whitespace. | 335 | 
|  | '>' is not preceded with whitespace. | 335 | 
|  | '{' is not preceded with whitespace. | 335 | 
|  | Line contains a tab character. | 336 | 
|  | '<' is not preceded with whitespace. | 336 | 
|  | '<' is not followed by whitespace. | 336 | 
|  | '>' is not preceded with whitespace. | 336 | 
|  | '>' is not followed by whitespace. | 336 | 
|  | Line contains a tab character. | 338 | 
|  | Line contains a tab character. | 340 | 
|  | 'while' is not followed by whitespace. | 340 | 
|  | '{' is not preceded with whitespace. | 340 | 
|  | Line contains a tab character. | 341 | 
|  | '=' is not followed by whitespace. | 341 | 
|  | 'cast' is not followed by whitespace. | 341 | 
|  | Line contains a tab character. | 342 | 
|  | 'if' is not followed by whitespace. | 342 | 
|  | '{' is not preceded with whitespace. | 342 | 
|  | Line contains a tab character. | 343 | 
|  | Line has trailing spaces. | 344 | 
|  | Line contains a tab character. | 344 | 
|  | Line contains a tab character. | 345 | 
|  | Line has trailing spaces. | 346 | 
|  | Line contains a tab character. | 346 | 
|  | Line contains a tab character. | 347 | 
|  | Line contains a tab character. | 348 | 
|  | Line has trailing spaces. | 350 | 
|  | Method 'getX' is not designed for extension - needs to be abstract, final or empty. | 356 | 
|  | Line contains a tab character. | 357 | 
|  | Line has trailing spaces. | 359 | 
|  | Missing a Javadoc comment. | 360 | 
|  | '<' is not preceded with whitespace. | 360 | 
|  | '<' is not followed by whitespace. | 360 | 
|  | '>' is not preceded with whitespace. | 360 | 
|  | Variable 'childList' must be private and have accessor methods. | 360 | 
|  | '=' is not preceded with whitespace. | 360 | 
|  | '=' is not followed by whitespace. | 360 | 
|  | Method 'setX' is not designed for extension - needs to be abstract, final or empty. | 365 | 
|  | Parameter newX should be final. | 365 | 
|  | Line contains a tab character. | 366 | 
|  | 'if' is not followed by whitespace. | 366 | 
|  | '{' is not preceded with whitespace. | 366 | 
|  | Line contains a tab character. | 367 | 
|  | Line contains a tab character. | 368 | 
|  | '=' is not preceded with whitespace. | 368 | 
|  | '=' is not followed by whitespace. | 368 | 
|  | Line contains a tab character. | 370 | 
|  | 'else' is not preceded with whitespace. | 370 | 
|  | '}' is not followed by whitespace. | 370 | 
|  | 'else' is not followed by whitespace. | 370 | 
|  | '{' is not preceded with whitespace. | 370 | 
|  | Line contains a tab character. | 372 | 
|  | '=' is not followed by whitespace. | 372 | 
|  | '-' is not preceded with whitespace. | 372 | 
|  | ';' is preceded with whitespace. | 372 | 
|  | Line contains a tab character. | 373 | 
|  | 'if' construct must use '{}'s. | 374 | 
|  | Line contains a tab character. | 374 | 
|  | 'if' is not followed by whitespace. | 374 | 
|  | '==' is not preceded with whitespace. | 374 | 
|  | '==' is not followed by whitespace. | 374 | 
|  | Line contains a tab character. | 375 | 
|  | Line contains a tab character. | 376 | 
|  | 'for' is not followed by whitespace. | 376 | 
|  | ':' is not preceded with whitespace. | 376 | 
|  | '{' is not preceded with whitespace. | 376 | 
|  | Line contains a tab character. | 378 | 
|  | 'cast' is not followed by whitespace. | 378 | 
|  | Line contains a tab character. | 379 | 
|  | Line contains a tab character. | 380 | 
|  | Line contains a tab character. | 381 | 
|  | Line has trailing spaces. | 383 | 
|  | Line has trailing spaces. | 384 | 
|  | Method 'getY' is not designed for extension - needs to be abstract, final or empty. | 390 | 
|  | Line contains a tab character. | 391 | 
|  | Method 'setY' is not designed for extension - needs to be abstract, final or empty. | 398 | 
|  | Parameter newY should be final. | 398 | 
|  | Line contains a tab character. | 399 | 
|  | 'if' is not followed by whitespace. | 399 | 
|  | '{' is not preceded with whitespace. | 399 | 
|  | Line contains a tab character. | 400 | 
|  | Line contains a tab character. | 401 | 
|  | Line contains a tab character. | 403 | 
|  | 'else' is not preceded with whitespace. | 403 | 
|  | '}' is not followed by whitespace. | 403 | 
|  | 'else' is not followed by whitespace. | 403 | 
|  | '{' is not preceded with whitespace. | 403 | 
|  | Line contains a tab character. | 405 | 
|  | '-' is not preceded with whitespace. | 405 | 
|  | '-' is not followed by whitespace. | 405 | 
|  | Line contains a tab character. | 406 | 
|  | 'if' construct must use '{}'s. | 407 | 
|  | Line contains a tab character. | 407 | 
|  | 'if' is not followed by whitespace. | 407 | 
|  | '==' is not preceded with whitespace. | 407 | 
|  | '==' is not followed by whitespace. | 407 | 
|  | Line contains a tab character. | 408 | 
|  | Line has trailing spaces. | 409 | 
|  | Line contains a tab character. | 409 | 
|  | Line contains a tab character. | 410 | 
|  | 'for' is not followed by whitespace. | 410 | 
|  | ':' is not preceded with whitespace. | 410 | 
|  | '{' is not preceded with whitespace. | 410 | 
|  | Line contains a tab character. | 411 | 
|  | 'cast' is not followed by whitespace. | 411 | 
|  | Line contains a tab character. | 412 | 
|  | Line contains a tab character. | 413 | 
|  | Line contains a tab character. | 414 | 
|  | Line has trailing spaces. | 417 | 
|  | Line has trailing spaces. | 418 | 
|  | Line has trailing spaces. | 419 | 
|  | Line has trailing spaces. | 420 | 
|  | Line has trailing spaces. | 421 | 
|  | Line has trailing spaces. | 422 | 
|  | Line has trailing spaces. | 423 | 
|  | Line has trailing spaces. | 424 | 
|  | Line has trailing spaces. | 425 | 
|  | Line has trailing spaces. | 426 | 
|  | Line has trailing spaces. | 427 | 
|  | Line has trailing spaces. | 428 | 
|  | Line has trailing spaces. | 429 | 
| Violation | Message | Line | 
|---|---|---|
|  | Missing a Javadoc comment. | 37 | 
|  | Missing a Javadoc comment. | 38 | 
|  | Method 'addFile' is not designed for extension - needs to be abstract, final or empty. | 71 | 
|  | Method 'getEntityIterator' is not designed for extension - needs to be abstract, final or empty. | 81 | 
|  | Method 'getTileGenerator' is not designed for extension - needs to be abstract, final or empty. | 93 | 
|  | '{' is not preceded with whitespace. | 93 | 
|  | 'cast' is not followed by whitespace. | 97 | 
| Violation | Message | Line | 
|---|---|---|
|  | Line has trailing spaces. | 44 | 
|  | Line has trailing spaces. | 45 | 
|  | Missing a Javadoc comment. | 46 | 
|  | Missing a Javadoc comment. | 47 | 
|  | Line has trailing spaces. | 48 | 
|  | Missing a Javadoc comment. | 49 | 
|  | Line has trailing spaces. | 50 | 
|  | Missing a Javadoc comment. | 51 | 
|  | Method 'getParentName' is not designed for extension - needs to be abstract, final or empty. | 57 | 
|  | '{' is not preceded with whitespace. | 57 | 
|  | Line contains a tab character. | 59 | 
|  | Method 'setParentName' is not designed for extension - needs to be abstract, final or empty. | 66 | 
|  | Parameter newParentName should be final. | 66 | 
|  | Line contains a tab character. | 67 | 
|  | Line has trailing spaces. | 70 | 
|  | Line has trailing spaces. | 89 | 
|  | Missing a Javadoc comment. | 91 | 
|  | Parameter molecule should be final. | 91 | 
|  | '{' is not preceded with whitespace. | 91 | 
|  | 'if' construct must use '{}'s. | 92 | 
|  | Line contains a tab character. | 92 | 
|  | 'if' is not followed by whitespace. | 92 | 
|  | '==' is not preceded with whitespace. | 92 | 
|  | '==' is not followed by whitespace. | 92 | 
|  | Line has trailing spaces. | 93 | 
|  | Line contains a tab character. | 93 | 
|  | Line contains a tab character. | 94 | 
|  | Line contains a tab character. | 95 | 
|  | Line contains a tab character. | 96 | 
|  | Line contains a tab character. | 97 | 
|  | Line contains a tab character. | 98 | 
|  | Line contains a tab character. | 99 | 
|  | Line has trailing spaces. | 100 | 
|  | Line contains a tab character. | 100 | 
|  | Line has trailing spaces. | 101 | 
|  | Line contains a tab character. | 101 | 
|  | Line has trailing spaces. | 102 | 
|  | Line contains a tab character. | 102 | 
|  | Line has trailing spaces. | 104 | 
|  | Line has trailing spaces. | 105 | 
|  | Missing a Javadoc comment. | 108 | 
|  | Missing a Javadoc comment. | 118 | 
|  | Line has trailing spaces. | 130 | 
|  | Line contains a tab character. | 130 | 
|  | Line contains a tab character. | 131 | 
|  | Line contains a tab character. | 132 | 
|  | Line has trailing spaces. | 133 | 
|  | Line contains a tab character. | 133 | 
|  | Line contains a tab character. | 134 | 
|  | '+' is not preceded with whitespace. | 134 | 
|  | '+' is not followed by whitespace. | 134 | 
|  | ',' is not followed by whitespace. | 138 | 
|  | Method 'related' is not designed for extension - needs to be abstract, final or empty. | 155 | 
|  | Line has trailing spaces. | 172 | 
|  | Line contains a tab character. | 172 | 
|  | Line has trailing spaces. | 173 | 
|  | Line contains a tab character. | 173 | 
|  | Line contains a tab character. | 174 | 
|  | Method 'resolve' is not designed for extension - needs to be abstract, final or empty. | 208 | 
|  | Method 'analyze' is not designed for extension - needs to be abstract, final or empty. | 226 | 
|  | Method 'identical' is not designed for extension - needs to be abstract, final or empty. | 263 | 
| Violation | Message | Line | 
|---|---|---|
|  | Missing package documentation file. | 0 | 
| Violation | Message | Line | 
|---|---|---|
|  | Missing a Javadoc comment. | 43 | 
|  | Missing a Javadoc comment. | 44 | 
|  | Method 'getWorldName' is not designed for extension - needs to be abstract, final or empty. | 63 | 
|  | Method 'setWorldName' is not designed for extension - needs to be abstract, final or empty. | 73 | 
|  | Method 'getTempDir' is not designed for extension - needs to be abstract, final or empty. | 85 | 
|  | 'worldName' hides a field. | 92 | 
|  | Method 'setTempDir' is not designed for extension - needs to be abstract, final or empty. | 120 | 
|  | Missing a Javadoc comment. | 125 | 
|  | Missing a Javadoc comment. | 131 | 
|  | Missing a Javadoc comment. | 141 | 
|  | Missing a Javadoc comment. | 150 | 
|  | Missing a Javadoc comment. | 157 | 
|  | Missing a Javadoc comment. | 166 | 
|  | '420' is a magic number. | 167 | 
|  | '420' is a magic number. | 167 | 
|  | '30' is a magic number. | 171 | 
|  | '420' is a magic number. | 183 | 
|  | '420' is a magic number. | 184 | 
|  | '420' is a magic number. | 187 | 
|  | Method 'writeTo' is not designed for extension - needs to be abstract, final or empty. | 200 | 
|  | Missing a Javadoc comment. | 220 | 
| Violation | Message | Line | 
|---|---|---|
|  | Missing a Javadoc comment. | 41 | 
|  | Missing a Javadoc comment. | 43 | 
|  | Missing a Javadoc comment. | 55 | 
|  | Missing a Javadoc comment. | 65 | 
|  | Line contains a tab character. | 67 | 
|  | '(' is followed by whitespace. | 67 | 
|  | ')' is preceded with whitespace. | 67 | 
|  | Line is longer than 80 characters. | 68 | 
|  | Line contains a tab character. | 68 | 
|  | '(' is followed by whitespace. | 68 | 
|  | ')' is preceded with whitespace. | 68 | 
|  | Method 'generateTile' is not designed for extension - needs to be abstract, final or empty. | 83 | 
|  | Line has trailing spaces. | 85 | 
|  | Line contains a tab character. | 85 | 
| Violation | Message | Line | 
|---|---|---|
|  | Unused import - java.util.List. | 21 | 
|  | Unused import - java.util.Collection. | 25 | 
|  | Unused import - org.molwind.graph.EntityGraph. | 30 | 
|  | Unused import - org.molwind.view.TopologyManager. | 37 | 
|  | Unused import - org.molwind.model.PlacedWorldEntity. | 39 | 
|  | Unused import - org.openscience.cdk.tools.MFAnalyser. | 43 | 
|  | Unused import - org.openscience.cdk.interfaces.IMolecule. | 44 | 
|  | Unused import - edu.uci.ics.jung.algorithms.layout.AbstractLayout. | 49 | 
|  | Line has trailing spaces. | 52 | 
|  | Unused import - edu.uci.ics.jung.graph.Graph. | 52 | 
|  | Unused import - edu.uci.ics.jung.visualization.BasicVisualizationServer. | 54 | 
|  | Missing a Javadoc comment. | 67 | 
|  | Missing a Javadoc comment. | 68 | 
|  | Missing a Javadoc comment. | 69 | 
|  | Line contains a tab character. | 75 | 
|  | Line has trailing spaces. | 78 | 
|  | Line has trailing spaces. | 79 | 
|  | Line is longer than 80 characters. | 80 | 
|  | Missing a Javadoc comment. | 80 | 
|  | '<' is not preceded with whitespace. | 80 | 
|  | '<' is not followed by whitespace. | 80 | 
|  | ',' is not followed by whitespace. | 80 | 
|  | '>' is not preceded with whitespace. | 80 | 
|  | Parameter entityArray should be final. | 80 | 
|  | '{' is not preceded with whitespace. | 80 | 
|  | Line is longer than 80 characters. | 81 | 
|  | Line contains a tab character. | 81 | 
|  | '<' is not preceded with whitespace. | 81 | 
|  | '<' is not followed by whitespace. | 81 | 
|  | ',' is not followed by whitespace. | 81 | 
|  | '>' is not preceded with whitespace. | 81 | 
|  | '<' is not preceded with whitespace. | 81 | 
|  | '<' is not followed by whitespace. | 81 | 
|  | ',' is not followed by whitespace. | 81 | 
|  | '>' is not preceded with whitespace. | 81 | 
|  | '>' is not followed by whitespace. | 81 | 
|  | Line has trailing spaces. | 82 | 
|  | Line contains a tab character. | 82 | 
|  | Line contains a tab character. | 83 | 
|  | 'for' is not followed by whitespace. | 83 | 
|  | ';' is not followed by whitespace. | 83 | 
|  | '<' is not preceded with whitespace. | 83 | 
|  | '<' is not followed by whitespace. | 83 | 
|  | ';' is not followed by whitespace. | 83 | 
|  | '{' is not preceded with whitespace. | 83 | 
|  | Line contains a tab character. | 84 | 
|  | Line contains a tab character. | 85 | 
|  | 'for' is not followed by whitespace. | 85 | 
|  | '+' is not preceded with whitespace. | 85 | 
|  | '+' is not followed by whitespace. | 85 | 
|  | ';' is not followed by whitespace. | 85 | 
|  | '<' is not preceded with whitespace. | 85 | 
|  | '<' is not followed by whitespace. | 85 | 
|  | ';' is not followed by whitespace. | 85 | 
|  | '{' is not preceded with whitespace. | 85 | 
|  | Line is longer than 80 characters. | 86 | 
|  | Line contains a tab character. | 86 | 
|  | '<' is not preceded with whitespace. | 86 | 
|  | '<' is not followed by whitespace. | 86 | 
|  | '>' is not preceded with whitespace. | 86 | 
|  | '<' is not preceded with whitespace. | 86 | 
|  | '<' is not followed by whitespace. | 86 | 
|  | '>' is not preceded with whitespace. | 86 | 
|  | '>' is not followed by whitespace. | 86 | 
|  | ',' is not followed by whitespace. | 86 | 
|  | Line is longer than 80 characters. | 87 | 
|  | Line contains a tab character. | 87 | 
|  | '+' is not preceded with whitespace. | 87 | 
|  | Line is longer than 80 characters. | 88 | 
|  | Line contains a tab character. | 88 | 
|  | ',' is not followed by whitespace. | 88 | 
|  | ',' is not followed by whitespace. | 88 | 
|  | Line contains a tab character. | 89 | 
|  | ',' is not followed by whitespace. | 89 | 
|  | ',' is not followed by whitespace. | 89 | 
|  | Line has trailing spaces. | 90 | 
|  | Line contains a tab character. | 90 | 
|  | Line contains a tab character. | 91 | 
|  | Line contains a tab character. | 92 | 
|  | Line has trailing spaces. | 93 | 
|  | Line contains a tab character. | 93 | 
|  | Line contains a tab character. | 94 | 
|  | Line has trailing spaces. | 95 | 
|  | Line contains a tab character. | 95 | 
|  | Line contains a tab character. | 96 | 
|  | Line has trailing spaces. | 97 | 
|  | Line contains a tab character. | 97 | 
|  | Line has trailing spaces. | 99 | 
|  | Line is longer than 80 characters. | 100 | 
|  | Missing a Javadoc comment. | 100 | 
|  | Parameter graph should be final. | 100 | 
|  | '<' is not preceded with whitespace. | 100 | 
|  | '<' is not followed by whitespace. | 100 | 
|  | ',' is not followed by whitespace. | 100 | 
|  | '>' is not preceded with whitespace. | 100 | 
|  | ',' is not followed by whitespace. | 100 | 
|  | Parameter vertex should be final. | 100 | 
|  | '{' is not preceded with whitespace. | 100 | 
|  | Line is longer than 80 characters. | 101 | 
|  | Line contains a tab character. | 101 | 
|  | Line contains a tab character. | 102 | 
|  | Line contains a tab character. | 103 | 
|  | 'for' is not followed by whitespace. | 103 | 
|  | ':' is not preceded with whitespace. | 103 | 
|  | ':' is not followed by whitespace. | 103 | 
|  | '{' is not preceded with whitespace. | 103 | 
|  | Line contains a tab character. | 104 | 
|  | '=' is not followed by whitespace. | 104 | 
|  | 'cast' is not followed by whitespace. | 104 | 
|  | Line contains a tab character. | 105 | 
|  | '=' is not preceded with whitespace. | 105 | 
|  | '=' is not followed by whitespace. | 105 | 
|  | Line contains a tab character. | 106 | 
|  | Line contains a tab character. | 107 | 
|  | Line has trailing spaces. | 108 | 
|  | Line contains a tab character. | 108 | 
|  | Line has trailing spaces. | 109 | 
|  | Line contains a tab character. | 109 | 
|  | Line contains a tab character. | 110 | 
|  | Line has trailing spaces. | 112 | 
|  | Method 'calculatePositions' is not designed for extension - needs to be abstract, final or empty. | 114 | 
|  | Missing a Javadoc comment. | 114 | 
|  | Line is longer than 80 characters. | 121 | 
|  | '=' is not followed by whitespace. | 121 | 
|  | Line has trailing spaces. | 122 | 
|  | Line contains a tab character. | 122 | 
|  | Line contains a tab character. | 123 | 
|  | Line has trailing spaces. | 124 | 
|  | Line contains a tab character. | 124 | 
|  | Line has trailing spaces. | 125 | 
|  | Line contains a tab character. | 125 | 
|  | Line contains a tab character. | 126 | 
|  | '(' is followed by whitespace. | 126 | 
|  | '+' is not preceded with whitespace. | 126 | 
|  | '+' is not followed by whitespace. | 126 | 
|  | ')' is preceded with whitespace. | 126 | 
|  | Line is longer than 80 characters. | 128 | 
|  | Line contains a tab character. | 128 | 
|  | '<' is not preceded with whitespace. | 128 | 
|  | '<' is not followed by whitespace. | 128 | 
|  | ',' is not followed by whitespace. | 128 | 
|  | '>' is not preceded with whitespace. | 128 | 
|  | '<' is not preceded with whitespace. | 128 | 
|  | '<' is not followed by whitespace. | 128 | 
|  | ',' is not followed by whitespace. | 128 | 
|  | '>' is not preceded with whitespace. | 128 | 
|  | '>' is not followed by whitespace. | 128 | 
|  | '{' is not preceded with whitespace. | 128 | 
|  | Line contains a tab character. | 129 | 
|  | Parameter edge should be final. | 129 | 
|  | '{' is not preceded with whitespace. | 129 | 
|  | Line contains a tab character. | 130 | 
|  | Line contains a tab character. | 131 | 
|  | Line contains a tab character. | 132 | 
|  | Line contains a tab character. | 133 | 
|  | '1000' is a magic number. | 133 | 
|  | Line contains a tab character. | 135 | 
|  | 'for' is not followed by whitespace. | 135 | 
|  | '-' is not preceded with whitespace. | 135 | 
|  | '-' is not followed by whitespace. | 135 | 
|  | ';' is not followed by whitespace. | 135 | 
|  | '>' is not preceded with whitespace. | 135 | 
|  | '>' is not followed by whitespace. | 135 | 
|  | ';' is not followed by whitespace. | 135 | 
|  | '{' is not preceded with whitespace. | 135 | 
|  | Line contains a tab character. | 136 | 
|  | '-' is not preceded with whitespace. | 136 | 
|  | '-' is not followed by whitespace. | 136 | 
|  | Line contains a tab character. | 137 | 
|  | Line has trailing spaces. | 138 | 
|  | Line contains a tab character. | 138 | 
|  | Line is longer than 80 characters. | 139 | 
|  | Line contains a tab character. | 139 | 
|  | '<' is not preceded with whitespace. | 139 | 
|  | '<' is not followed by whitespace. | 139 | 
|  | ',' is not followed by whitespace. | 139 | 
|  | '>' is not preceded with whitespace. | 139 | 
|  | ',' is not followed by whitespace. | 139 | 
|  | ',' is not followed by whitespace. | 139 | 
|  | Line contains a tab character. | 140 | 
|  | '<' is not preceded with whitespace. | 140 | 
|  | '<' is not followed by whitespace. | 140 | 
|  | ',' is not followed by whitespace. | 140 | 
|  | '>' is not preceded with whitespace. | 140 | 
|  | '>' is not followed by whitespace. | 140 | 
|  | Line contains a tab character. | 141 | 
|  | Line contains a tab character. | 142 | 
|  | '<' is not preceded with whitespace. | 142 | 
|  | '<' is not followed by whitespace. | 142 | 
|  | ',' is not followed by whitespace. | 142 | 
|  | '>' is not preceded with whitespace. | 142 | 
|  | '>' is not followed by whitespace. | 142 | 
|  | Line has trailing spaces. | 143 | 
|  | Line contains a tab character. | 143 | 
|  | Line has trailing spaces. | 144 | 
|  | Line contains a tab character. | 144 | 
|  | 'for' construct must use '{}'s. | 145 | 
|  | Line contains a tab character. | 145 | 
|  | 'for' is not followed by whitespace. | 145 | 
|  | ':' is not preceded with whitespace. | 145 | 
|  | ':' is not followed by whitespace. | 145 | 
|  | Line contains a tab character. | 146 | 
|  | Line has trailing spaces. | 147 | 
|  | Line contains a tab character. | 147 | 
|  | 'for' construct must use '{}'s. | 148 | 
|  | Line contains a tab character. | 148 | 
|  | 'for' is not followed by whitespace. | 148 | 
|  | ':' is not preceded with whitespace. | 148 | 
|  | ':' is not followed by whitespace. | 148 | 
|  | Line contains a tab character. | 149 | 
|  | Line has trailing spaces. | 150 | 
|  | Line contains a tab character. | 150 | 
|  | Line is longer than 80 characters. | 151 | 
|  | Line contains a tab character. | 151 | 
|  | '<' is not preceded with whitespace. | 151 | 
|  | '<' is not followed by whitespace. | 151 | 
|  | ',' is not followed by whitespace. | 151 | 
|  | '>' is not preceded with whitespace. | 151 | 
|  | '<' is not preceded with whitespace. | 151 | 
|  | '<' is not followed by whitespace. | 151 | 
|  | ',' is not followed by whitespace. | 151 | 
|  | '>' is not preceded with whitespace. | 151 | 
|  | '>' is not followed by whitespace. | 151 | 
|  | ',' is not followed by whitespace. | 151 | 
|  | Line contains a tab character. | 152 | 
|  | Line contains a tab character. | 153 | 
|  | '300' is a magic number. | 153 | 
|  | Line contains a tab character. | 154 | 
|  | ',' is not followed by whitespace. | 154 | 
|  | Line contains a tab character. | 155 | 
|  | 'for' construct must use '{}'s. | 156 | 
|  | Line contains a tab character. | 156 | 
|  | 'for' is not followed by whitespace. | 156 | 
|  | ';' is not followed by whitespace. | 156 | 
|  | '<' is not preceded with whitespace. | 156 | 
|  | '100' is a magic number. | 156 | 
|  | '<' is not followed by whitespace. | 156 | 
|  | ';' is not followed by whitespace. | 156 | 
|  | Line contains a tab character. | 157 | 
|  | Line is longer than 80 characters. | 158 | 
|  | Line contains a tab character. | 158 | 
|  | Line contains a tab character. | 159 | 
|  | 'for' is not followed by whitespace. | 159 | 
|  | ':' is not preceded with whitespace. | 159 | 
|  | ':' is not followed by whitespace. | 159 | 
|  | '{' is not preceded with whitespace. | 159 | 
|  | Line is longer than 80 characters. | 160 | 
|  | Line contains a tab character. | 160 | 
|  | 'cast' is not followed by whitespace. | 160 | 
|  | Line contains a tab character. | 161 | 
|  | Line has trailing spaces. | 162 | 
|  | Line contains a tab character. | 162 | 
|  | Line has trailing spaces. | 163 | 
|  | Line contains a tab character. | 163 | 
|  | Line is longer than 80 characters. | 164 | 
|  | Line contains a tab character. | 164 | 
|  | Line contains a tab character. | 165 | 
|  | 'try' is not followed by whitespace. | 165 | 
|  | '{' is not preceded with whitespace. | 165 | 
|  | Line contains a tab character. | 166 | 
|  | 'for' is not followed by whitespace. | 166 | 
|  | '{' is not preceded with whitespace. | 166 | 
|  | Line contains a tab character. | 167 | 
|  | ',' is not followed by whitespace. | 167 | 
|  | Line has trailing spaces. | 168 | 
|  | Line contains a tab character. | 168 | 
|  | Line contains a tab character. | 169 | 
|  | Line contains a tab character. | 170 | 
|  | 'for' is not followed by whitespace. | 170 | 
|  | ':' is not preceded with whitespace. | 170 | 
|  | ':' is not followed by whitespace. | 170 | 
|  | '{' is not preceded with whitespace. | 170 | 
|  | Line has trailing spaces. | 171 | 
|  | Line contains a tab character. | 171 | 
|  | Line contains a tab character. | 172 | 
|  | '+=' is not followed by whitespace. | 172 | 
|  | Line contains a tab character. | 173 | 
|  | Line contains a tab character. | 174 | 
|  | Line has trailing spaces. | 175 | 
|  | Line contains a tab character. | 175 | 
|  | 'if' construct must use '{}'s. | 176 | 
|  | Line contains a tab character. | 176 | 
|  | 'if' is not followed by whitespace. | 176 | 
|  | '40' is a magic number. | 176 | 
|  | Line contains a tab character. | 177 | 
|  | '40' is a magic number. | 177 | 
|  | Line contains a tab character. | 178 | 
|  | '*=' is not followed by whitespace. | 178 | 
|  | Line has trailing spaces. | 179 | 
|  | Line contains a tab character. | 179 | 
|  | Line is longer than 80 characters. | 180 | 
|  | Line contains a tab character. | 180 | 
|  | '<' is not preceded with whitespace. | 180 | 
|  | '<' is not followed by whitespace. | 180 | 
|  | ',' is not followed by whitespace. | 180 | 
|  | '>' is not preceded with whitespace. | 180 | 
|  | '<' is not preceded with whitespace. | 180 | 
|  | '<' is not followed by whitespace. | 180 | 
|  | ',' is not followed by whitespace. | 180 | 
|  | '>' is not preceded with whitespace. | 180 | 
|  | '>' is not followed by whitespace. | 180 | 
|  | Line has trailing spaces. | 181 | 
|  | Line contains a tab character. | 181 | 
|  | Line is longer than 80 characters. | 182 | 
|  | Line contains a tab character. | 182 | 
|  | Line has trailing spaces. | 183 | 
|  | Line contains a tab character. | 183 | 
|  | Line contains a tab character. | 184 | 
|  | Line contains a tab character. | 185 | 
|  | ',' is not followed by whitespace. | 185 | 
|  | Line has trailing spaces. | 186 | 
|  | Line contains a tab character. | 186 | 
|  | Line contains a tab character. | 187 | 
|  | ',' is not followed by whitespace. | 187 | 
|  | Line contains a tab character. | 188 | 
|  | Line contains a tab character. | 189 | 
|  | 'for' is not followed by whitespace. | 189 | 
|  | ':' is not preceded with whitespace. | 189 | 
|  | ':' is not followed by whitespace. | 189 | 
|  | '{' is not preceded with whitespace. | 189 | 
|  | Line has trailing spaces. | 190 | 
|  | Line contains a tab character. | 190 | 
|  | Line has trailing spaces. | 191 | 
|  | Line contains a tab character. | 191 | 
|  | Line has trailing spaces. | 192 | 
|  | Line contains a tab character. | 192 | 
|  | Line is longer than 80 characters. | 193 | 
|  | Line contains a tab character. | 193 | 
|  | 'cast' is not followed by whitespace. | 193 | 
|  | Line contains a tab character. | 194 | 
|  | Line has trailing spaces. | 195 | 
|  | Line contains a tab character. | 195 | 
|  | Line contains a tab character. | 196 | 
|  | Line contains a tab character. | 197 | 
|  | 'catch' is not preceded with whitespace. | 197 | 
|  | '}' is not followed by whitespace. | 197 | 
|  | 'catch' is not followed by whitespace. | 197 | 
|  | '{' is not preceded with whitespace. | 197 | 
|  | Must have at least one statement. | 197 | 
|  | Line has trailing spaces. | 198 | 
|  | Line contains a tab character. | 198 | 
|  | Line contains a tab character. | 199 | 
|  | Line contains a tab character. | 200 | 
|  | '*=' is not followed by whitespace. | 200 | 
|  | '4' is a magic number. | 200 | 
|  | Line contains a tab character. | 201 | 
|  | Line has trailing spaces. | 202 | 
|  | Line contains a tab character. | 202 | 
|  | Line contains a tab character. | 203 | 
|  | Line has trailing spaces. | 204 | 
|  | Line contains a tab character. | 204 | 
|  | Line contains a tab character. | 205 | 
|  | 'for' is not followed by whitespace. | 205 | 
|  | ':' is not preceded with whitespace. | 205 | 
|  | ':' is not followed by whitespace. | 205 | 
|  | '{' is not preceded with whitespace. | 205 | 
|  | Line contains a tab character. | 206 | 
|  | Line contains a tab character. | 207 | 
|  | Line contains a tab character. | 208 | 
|  | Line contains a tab character. | 209 | 
|  | Line has trailing spaces. | 210 | 
|  | Line contains a tab character. | 210 | 
|  | Line contains a tab character. | 211 | 
|  | Line has trailing spaces. | 212 | 
|  | Line contains a tab character. | 212 | 
|  | Method 'getVisibleEntities' is not designed for extension - needs to be abstract, final or empty. | 225 | 
|  | Missing a Javadoc comment. | 232 | 
| Violation | Message | Line | 
|---|---|---|
|  | Class MoleculeRendererFactory should be declared as final. | 29 | 
|  | Missing a Javadoc comment. | 31 | 
|  | Missing a Javadoc comment. | 33 | 
|  | Missing a Javadoc comment. | 35 | 
|  | Missing a Javadoc comment. | 39 | 
|  | Missing a Javadoc comment. | 99 | 
|  | Missing a Javadoc comment. | 103 | 
| Violation | Message | Line | 
|---|---|---|
|  | Missing a Javadoc comment. | 56 | 
|  | Method 'getZoom' is not designed for extension - needs to be abstract, final or empty. | 64 | 
|  | Method 'setZoom' is not designed for extension - needs to be abstract, final or empty. | 74 | 
|  | Missing a Javadoc comment. | 79 | 
|  | Missing a Javadoc comment. | 85 | 
|  | Missing a Javadoc comment. | 128 | 
|  | '6' is a magic number. | 136 | 
|  | '190' is a magic number. | 137 | 
|  | '255' is a magic number. | 137 | 
|  | '190' is a magic number. | 137 | 
|  | '16' is a magic number. | 138 | 
|  | '255' is a magic number. | 139 | 
|  | '255' is a magic number. | 139 | 
|  | '160' is a magic number. | 139 | 
|  | '255' is a magic number. | 141 | 
|  | '160' is a magic number. | 141 | 
|  | '160' is a magic number. | 141 | 
|  | Missing a Javadoc comment. | 147 | 
|  | '15' is a magic number. | 155 | 
|  | '10' is a magic number. | 158 | 
|  | '3' is a magic number. | 162 | 
|  | '10' is a magic number. | 163 | 
|  | '10' is a magic number. | 163 | 
|  | Missing a Javadoc comment. | 168 | 
|  | '15' is a magic number. | 169 | 
|  | '15' is a magic number. | 170 | 
|  | Missing a Javadoc comment. | 173 | 
|  | '12' is a magic number. | 188 | 
|  | '15' is a magic number. | 205 | 
|  | '15' is a magic number. | 205 | 
|  | Method 'getImage' is not designed for extension - needs to be abstract, final or empty. | 226 | 
| Violation | Message | Line | 
|---|---|---|
|  | Missing package documentation file. | 0 |